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The map label for this gene is pspD

Identifier: 30062827

GI number: 30062827

Start: 1363405

End: 1363626

Strand: Direct

Name: pspD

Synonym: S1394

Alternate gene names: 30062827

Gene position: 1363405-1363626 (Clockwise)

Preceding gene: 30062826

Following gene: 30062828

Centisome position: 29.64

GC content: 54.5

Gene sequence:

>222_bases
ATGAATACTCGCTGGCAACAGGCCGGGCAAAAGGTGAAGCTTGGTTTCAAATTAGCAGGCAAGCTGGTACTTCTTACCGC
ACTGCGCTATGGCCCGGCGGGTGTGGCGGGCTGGGCGATAAAATCAGTTGCTCGCCGACCGCTGAAAATGTTGCTGGCTG
TGGCGCTGGAACCGCTGTTAAGTCGGGCTGCTAATAAACTGGCACAGCGTTATAAAAGGTGA

Upstream 100 bases:

>100_bases
AACTGGCGGCAAGTGAAACGCGTTTACGCGAGATGGAACGTTATGTCACTTCCGATACTTTCACGTTACGTAGCCGTTTC
CGTCAACTGTGAGGAAAGTT

Downstream 100 bases:

>100_bases
GGGGAGTTTCGCAAAAATTGTTAAATCTCAGGCGTATAATGGATGGCAATTTTCATCCATAGAAGGACGCTTACATGTTT
AAAAAAAGGCTTACTTGCTC

Product: peripheral inner membrane phage-shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MNTRWQQAGQKVKLGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLLSRAANKLAQRYKR

Sequences:

>Translated_73_residues
MNTRWQQAGQKVKLGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLLSRAANKLAQRYKR
>Mature_73_residues
MNTRWQQAGQKVKLGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLLSRAANKLAQRYKR

Specific function: The phage shock protein (psp) operon (pspABCDE) may play a significant role in the competition for survival under nutrient- or energy-limited conditions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspD family [H]

Homologues:

Organism=Escherichia coli, GI1787565, Length=73, Percent_Identity=98.6301369863014, Blast_Score=138, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014321 [H]

Pfam domain/function: PF09584 Phageshock_PspD [H]

EC number: NA

Molecular weight: Translated: 8058; Mature: 8058

Theoretical pI: Translated: 12.42; Mature: 12.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRWQQAGQKVKLGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLL
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SRAANKLAQRYKR
HHHHHHHHHHHCC
>Mature Secondary Structure
MNTRWQQAGQKVKLGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLL
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SRAANKLAQRYKR
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]