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The map label for this gene is ybiF

Identifier: 30062297

GI number: 30062297

Start: 789429

End: 790316

Strand: Reverse

Name: ybiF

Synonym: S0806

Alternate gene names: 30062297

Gene position: 790316-789429 (Counterclockwise)

Preceding gene: 30062299

Following gene: 30062296

Centisome position: 17.18

GC content: 53.27

Gene sequence:

>888_bases
ATGCCTGGTTCATTACGTAAAATGCCGGTCTGGTTACCAATAGTCATATTGCTCGTTGCCATGGCGTCTATTCAGGGTGG
AGCCTCGTTAGCTAAGTCACTTTTTCCTCTGGTGAGCGCACCGGGTGTCACTGCGCTGCGTCTGGCATTAGGAACGCTGA
TCCTCATCGCGTTCTTTAAGCCATGGCGACTGCGCTTTGCCAAAGAGCAACGGTTACCGCTGTTGTTTTACGGCGTTTCG
CTGGGTGGGATGAATTATCTTTTTTATCTTTCTATTCAGACAGTACCGCTGGGTATTGCGGTGGCGCTGGAGTTCACCGG
ACCACTGGCGGTGGCGCTGTTCTCTTCTCGTCGCCCGGTAGATTTCGTCTGGGTTGTGCTGGCGGTTCTTGGTCTGTGGT
TCCTGCTACCGCTGGGGCAAGACGTTTCCCATGTCGATTTAACCGGCTGTGCGCTGGCACTGGGGGCCGGGGCTTGTTGG
GCTATTTACATTTTAAGTGGGCAACGCGCAGGAGCGGAACATGGCCCTGCGACGGTAGCAATTGGTTCGTTGATTGCAGC
GTTAATTTTCGTGCCAATTGGAGCGCTTCAGGCTGGTGAAGCACTCTGGCACTGGTCGGTTATTCCATTGGGTCTGGCTG
TCGTTATTCTCTCGACCGCTCTGCCTTATTCGCTGGAAATGATTGCCCTCACCCGTTTGCCAACACGGACATTTGGTACG
CTGATGAGCATGGAACCGGCGCTGGCTGCCGTTTCCGGGATGATTTTCCTCGGAGAAACACTGACACCCATACAGCTGCT
GGCGCTCGGCGCTATCATCGCCGCTTCAATGGGGTCTACGCTGACAGTACGCAAAGAGAGCAAAATAAAAGAATTAGACA
TTAATTAA

Upstream 100 bases:

>100_bases
CAAAACGGGGGAAAATTTTTTCAACAAATGCTCAACCAGCATTGGGTATATCCAGTACACTCCACGCTTTACTTAAGTCT
AGATATTTGTGGGAGAAAGG

Downstream 100 bases:

>100_bases
ATTTACATTTCTGTATGGTTATGCATAACCATGCAGAATTTCTCGCTACTTTTCCTCTACACCGTATTTATATATCGAAT
TATGCAAAAGCATATTTATT

Product: threonine and homoserine efflux system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVSAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVS
LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACW
AIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVVILSTALPYSLEMIALTRLPTRTFGT
LMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN

Sequences:

>Translated_295_residues
MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVSAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVS
LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACW
AIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVVILSTALPYSLEMIALTRLPTRTFGT
LMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN
>Mature_294_residues
PGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVSAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSL
GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWA
IYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVVILSTALPYSLEMIALTRLPTRTFGTL
MSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN

Specific function: Unknown

COG id: COG5006

COG function: function code R; Predicted permease, DMT superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1787033, Length=295, Percent_Identity=99.3220338983051, Blast_Score=567, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31227; Mature: 31096

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVSAPGVTALRLALGTLILIAFFK
CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
PWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPV
HHHHHHHHHCCCCEEEEEECCCCCEEEEEEEEEEECEEEEEEEEECCCEEEEHHCCCCCH
DFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVA
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHH
IGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVVILSTALPYSLEMIALTRLPTRTFGT
HHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHH
LMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN
HHHCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure 
PGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVSAPGVTALRLALGTLILIAFFK
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
PWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPV
HHHHHHHHHCCCCEEEEEECCCCCEEEEEEEEEEECEEEEEEEEECCCEEEEHHCCCCCH
DFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVA
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHH
IGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVVILSTALPYSLEMIALTRLPTRTFGT
HHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHH
LMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN
HHHCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]