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The map label for this gene is ybiC

Identifier: 30062286

GI number: 30062286

Start: 775133

End: 776218

Strand: Direct

Name: ybiC

Synonym: S0792

Alternate gene names: 30062286

Gene position: 775133-776218 (Clockwise)

Preceding gene: 30062285

Following gene: 30062290

Centisome position: 16.85

GC content: 55.62

Gene sequence:

>1086_bases
ATGGAAAGTGGTCATCGCTTTGATGCTCAGACGCTGCACAGTTTTATTCAGGCTGTATTTCGTCAGATGGGTAGCGAGGA
ACAAGAAGCGAAATTAGTTGCCGATCATTTAATCGCGGCAAACCTGGCAGGGCATGATTCTCATGGTATTGGCATGATCC
CAAGCTATGTGCGTTCCTGGAGTCAGGGGCATCTGCAAATTAACCATCATGCCAAAATCGTTAAAGAGGCGGGGGCGGCA
GTCACGCTCGATGGCGATCGCGCATTCGGTCAGGTCGCGGCACACGAAGCGATGGCGCTGGGGATTGAGAAAGCGCATCA
GCACGGTATTGCTGCCGTGGCGCTACATAACTCGCATCATATCGGCCGTATCGGTTACTGGGCGGAGCAGTGTTCAGCGG
CGGGGTTTGTCTCTATCCACTTTGTTAGCGTGGTCGGTATTCCAATGGTCGCGCCGTTCCACGGTCGCGACAGCCGCTTT
GGCACCAATCCCTTCTGTGTGGTTTTCCCTCGTAAAGATAATTTCCCGCTGTTGCTTGATTACGCCACCAGCGCCATTGC
ATTTGGCAAAACCCGCGTCGCCTGGCATAAAGGCGTCCCCGTGCCGCCAGGTTGCCTGATTGACGTTAACGGCGTGCCGA
CGACCAATCCGGCGGTAATGCAGGAGTCGCCGTTGGGGTCGCTGTTGACCTTTGCCGAACATAAAGGCTACGCCCTTGCA
GCGATGTGTGAAATTCTTGGCGGGGCGCTTTCTGGCGGTAAAACGACGCATCAGGAAACGTTGCAAACCAGCCCCGATGC
CATTCTTAACTGCATGACCACTATCATCATCAACCCGGAACTGTTCGGCGCGCCGGATTGTAACGCGCAGACCGAAGCCT
TTGCCGAGTGGGTGAAAGCCTCGCCGCATGATGACGATAAGCCGATTTTGCTACCGGGCGAGTGGGAAGTGAACACGCGT
CGCGAACGGCAGGAGCAGGGGATTCCATTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCGGCGCGGCAGATTGGTAT
GTCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCTAA

Upstream 100 bases:

>100_bases
CCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCGCGCCCGGCGTGCAGCATAAAAAAACAACAAACACAT
AACATAAACAGGAGTTAACC

Downstream 100 bases:

>100_bases
AAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGC
AAACAGACAGGGAAATACTT

Product: hypothetical protein

Products: oxaloacetate; NADH; H+

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAA
VTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCSAAGFVSIHFVSVVGIPMVAPFHGRDSRF
GTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALA
AMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTR
RERQEQGIPLDAGSWQAICDAARQIGMSEETLQAFCQQLAS

Sequences:

>Translated_361_residues
MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAA
VTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCSAAGFVSIHFVSVVGIPMVAPFHGRDSRF
GTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALA
AMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTR
RERQEQGIPLDAGSWQAICDAARQIGMSEETLQAFCQQLAS
>Mature_361_residues
MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAA
VTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCSAAGFVSIHFVSVVGIPMVAPFHGRDSRF
GTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALA
AMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTR
RERQEQGIPLDAGSWQAICDAARQIGMSEETLQAFCQQLAS

Specific function: Unknown

COG id: COG2055

COG function: function code C; Malate/L-lactate dehydrogenases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LDH2/MDH2 oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787020, Length=361, Percent_Identity=98.8919667590028, Blast_Score=741, Evalue=0.0,
Organism=Escherichia coli, GI1786727, Length=356, Percent_Identity=29.4943820224719, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1790000, Length=331, Percent_Identity=23.8670694864048, Blast_Score=109, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17507179, Length=315, Percent_Identity=28.8888888888889, Blast_Score=131, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17536633, Length=353, Percent_Identity=26.9121813031161, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI45553211, Length=311, Percent_Identity=30.8681672025724, Blast_Score=128, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24667912, Length=311, Percent_Identity=30.8681672025724, Blast_Score=128, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24667908, Length=313, Percent_Identity=30.6709265175719, Blast_Score=128, Evalue=7e-30,
Organism=Drosophila melanogaster, GI24667904, Length=311, Percent_Identity=30.8681672025724, Blast_Score=127, Evalue=8e-30,
Organism=Drosophila melanogaster, GI24658010, Length=306, Percent_Identity=28.1045751633987, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24648360, Length=331, Percent_Identity=28.0966767371601, Blast_Score=92, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003767 [H]

Pfam domain/function: PF02615 Ldh_2 [H]

EC number: 1.1.1.37

Molecular weight: Translated: 38916; Mature: 38916

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSW
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
SQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHH
CCCCEEECHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
IGRIGYWAEQCSAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLD
CCHHHHHHHHHCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEEECCCCCCEEEE
YATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALA
CHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHH
AMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKA
HHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHC
SPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGSWQAICDAARQIGMSEETLQAFCQQLA
CCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHC
S
C
>Mature Secondary Structure
MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSW
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
SQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHH
CCCCEEECHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
IGRIGYWAEQCSAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLD
CCHHHHHHHHHCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEEECCCCCCEEEE
YATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALA
CHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHH
AMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKA
HHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHC
SPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGSWQAICDAARQIGMSEETLQAFCQQLA
CCCCCCCCEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (S)-malate; NAD+

Specific reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]