Click here to switch to the map view.

The map label for this gene is lomR [H]

Identifier: 30062254

GI number: 30062254

Start: 741244

End: 741843

Strand: Direct

Name: lomR [H]

Synonym: S0757

Alternate gene names: 30062254

Gene position: 741244-741843 (Clockwise)

Preceding gene: 30062253

Following gene: 30062255

Centisome position: 16.12

GC content: 56.33

Gene sequence:

>600_bases
ATGCGTAAACTTTATGCTGCCATTTTGTCCGCAGCCATCTGTCTGGCTGTATCCGGTGCGCCTGCATGGGCGTCTGAACA
TCGGTCCACGCTGAGCGCGGGGTATCTTCATGCCTCGACGAACGCTCCCGGCAGTGATGATCTGAACGGGATTAACGTGA
AATACCGTTATGAGTTTACGGACACGCTGGGGCTGGTGACGTCATTCAGCTATGCCAACGCTGAAGATGAGCAAAAAACG
CATTACAGTGATACCCGCTGGCATGAGGATTCCGTGCGTAACCGCTGGTTCAGCGTGATGGCGGGGCTGTCTGTGCGCGT
GAATGAATGGTTCAGCGCGTATGCGATGGCGGGCGTGGCTTACAGCCGTGTGTCGACCTTCTCCGGGGATTATCTCCGCG
TAACTGACAACAAGGGGAAAACGCACGATGTGCTGACCGGGAGTGATGACAACCGCCACAGCAACACGTCTCTGGCGTGG
GGGGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGACCTTGCTTATGAAGGTTCCGGCAGTGGCGACTGGCG
CACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGA

Upstream 100 bases:

>100_bases
AAGAAATCCACAGCAGGTATCAGTATCAGCTGAATTTTATAACCCAGATACGGGCACCAGAAATGGTGCCTTTTTTATTG
CAGAAAAGCGAGAGGTAATT

Downstream 100 bases:

>100_bases
TTAGCCAGGTAACACAGTGTTATGACAGCCCGCTGGTTCAGGCGGGCTTTTTGTGGGGTGAATATGGCAGTAAAGATTTC
AGGTGTACTGAAAGATGGGG

Product: putative membrane protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKT
HYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAW
GAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF

Sequences:

>Translated_199_residues
MRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKT
HYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAW
GAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
>Mature_199_residues
MRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKT
HYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAW
GAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

Organism=Escherichia coli, GI1787034, Length=202, Percent_Identity=34.1584158415842, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 21780; Mature: 21780

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00694 ENT_VIR_OMP_1 ; PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFT
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEEC
DTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVA
CHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEG
HHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCEECCCCCEEEEEEEEC
SGSGDWRTDGFIVGVGYKF
CCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFT
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEEEC
DTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVA
CHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEG
HHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCEECCCCCEEEEEEEEC
SGSGDWRTDGFIVGVGYKF
CCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]