Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is 30062245
Identifier: 30062245
GI number: 30062245
Start: 730786
End: 731526
Strand: Direct
Name: 30062245
Synonym: S0748
Alternate gene names: NA
Gene position: 730786-731526 (Clockwise)
Preceding gene: 30062244
Following gene: 30062246
Centisome position: 15.89
GC content: 55.47
Gene sequence:
>741_bases ATGACCACACCAAATCCACTGGCAAAGACGAAAGGTGCGGGGACAACGTTCTGGATGTATACCGGCAACGGCGATGCGTT TGCGAACCCTTTGTCGGACACTGACTGGCTGCGTCTTGCGATGGTGAAGGATCTGCAACCTGGCGAAATGACCGCTGATG CAGAAGATGACACTTATCTCGATGATGAAGATGCAGACTGGAAAACGACAACCCAGGGGCAGAAATCCGTTGGTGATACT TCGGCGACGCTGGCCTGTCGTCCGGGTGACAGCGGGCAGAAAAAACTGGTTCAGTTGTTCGACTCCGGTGAAGTCTGCGC GTTTCGTATCAAATATCCCAACGGCACTGTTGATGTTTTCCGCGGCTGGCTGAGCTCACTGGGTAAAACCATTGCCTCAA AAGACGTGATGACCCGCACTGTGAAAATCAGCGGTGTGGGGCGTCCGTATCTGGCAGAGGAAGGCACTGAAACCGTGGGT GTTACCGGACTGACGGTGGCACCGGCATCTGTCAGTGTCAAAGCGGGAGCAACCACCACACTGACCTTTACAGTAAAACC TGACGGGGCCAGTGACAAAGCGATCAGTGTGCATTCGTCAGATCCTCAGACTGCTTCGGTGACCCTGAGCGGGCTTGTGG CCACGGTGAAAGGCGTGAAGCAGGGCAGTGTCAGCATCGTGGGCATGACCTCTGACGGAGAGTTTGTGGCAGTGGCTGCG GTGACCGTCAGCGCACCATAA
Upstream 100 bases:
>100_bases AACCCACTCGGTTTTAACTATCAACGTGATAATGAGATGGCTACCTGGGCGATGGCGGAAATCACGTACCAGATCACGTA CACGAATTAAGGAGGTGGTA
Downstream 100 bases:
>100_bases CAGGACGATACTCATCATTGCCCCGGTTATCCGGGGCTTTTTGCATCCGGAGAACATGATGTTTCTGAAACAGGATACGT TTAATTATGAAAAACAGTCC
Product: putative tail component of prophage CP-933K
Products: NA
Alternate protein names: Gifsy-2 Prophage VmtV; Ig Domain-Containing Domain-Containing Protein; Tail-Like Protein; Tail Protein
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDT SATLACRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVG VTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAA VTVSAP
Sequences:
>Translated_246_residues MTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDT SATLACRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVG VTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAA VTVSAP >Mature_245_residues TTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTS ATLACRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGV TGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAAV TVSAP
Specific function: Unknown
COG id: COG5492
COG function: function code N; Bacterial surface proteins containing Ig-like domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25542; Mature: 25411
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYL CCCCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEHHCCCCCCEECCCCCCCCC DDEDADWKTTTQGQKSVGDTSATLACRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVF CCCCCCCEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHH RGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTT HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCEEE LTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAA EEEEECCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEE VTVSAP EEEECC >Mature Secondary Structure TTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYL CCCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEHHCCCCCCEECCCCCCCCC DDEDADWKTTTQGQKSVGDTSATLACRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVF CCCCCCCEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHH RGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTT HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCEEE LTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAA EEEEECCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEE VTVSAP EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA