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The map label for this gene is ybeU

Identifier: 30062163

GI number: 30062163

Start: 666537

End: 667244

Strand: Reverse

Name: ybeU

Synonym: S0655

Alternate gene names: 30062163

Gene position: 667244-666537 (Counterclockwise)

Preceding gene: 30062165

Following gene: 30062162

Centisome position: 14.51

GC content: 48.02

Gene sequence:

>708_bases
ATGAATAAGGAAGAACAATATCTTCTTTTTGCGCTTTCTGCGCCCATGGAAATACTTAATCAGAGTTGCAAACCCGCGCA
TGACTCGCCAAAAATGTATACCGGGATAAAAGAATTCGATCTCTCATCATCCTGGGGAATAAATAATCGTGATGATTTAA
TTCAGACTATTTATCAGATGACTGATGATGGTCATGCCAATGATTTAGCTGGCTTATATCTGACATGGCAACGCTCTTCC
CCTGAAGAGTGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTAT
GTGCTGTGGAGAAGGGGGAATCAAAGCCTGGGATTATGTTCGAATGGGATTTCTGTCACGGGCCGGTGTGCTCAACAACT
GGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGCACGAGCTCACCATTACTATCACAGCTGGATGCAC
TATTTTTCTGCCTATTCACTAGGGCGTCTCTACTGGCAATCTTCTCAGTGCGAAGACAACGCTTCGCTACGCGAGGCGCT
AACCCTGTACAAATACGATAGCGCCGGGAGTCGGATGTTCGAAGAGCTGGCAGCGGGAAGCGACCGTTTCTATGCCACGC
TTCCCTGGCAGCCATTAACTGTCCAGCCTGAATGCCCGGTAACGCTTAAGGATGTGAGCGACCTATGA

Upstream 100 bases:

>100_bases
TGTGAATGCTTCGATTTTCTTTTTATTTTGAAAGCGTCAAGTTTATACTCATCAATAATAAAAAAGTAGTCAGTTAATGC
ACTTAAGGGATTATTAAAAA

Downstream 100 bases:

>100_bases
AAACATGTTGGCAAATCCTCGAAATTGAAAGCACGACGCAAATAGACATTATCCGCCAGGCTTATCTTGCTCGCTTACCG
TTGTGTCATCCCGAAACCGA

Product: putative tRNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNKEEQYLLFALSAPMEILNQSCKPAHDSPKMYTGIKEFDLSSSWGINNRDDLIQTIYQMTDDGHANDLAGLYLTWQRSS
PEEWKALIAGGSERGLIYTQFVAQTAMCCGEGGIKAWDYVRMGFLSRAGVLNNWLTEEESLWLQSRVYARAHHYYHSWMH
YFSAYSLGRLYWQSSQCEDNASLREALTLYKYDSAGSRMFEELAAGSDRFYATLPWQPLTVQPECPVTLKDVSDL

Sequences:

>Translated_235_residues
MNKEEQYLLFALSAPMEILNQSCKPAHDSPKMYTGIKEFDLSSSWGINNRDDLIQTIYQMTDDGHANDLAGLYLTWQRSS
PEEWKALIAGGSERGLIYTQFVAQTAMCCGEGGIKAWDYVRMGFLSRAGVLNNWLTEEESLWLQSRVYARAHHYYHSWMH
YFSAYSLGRLYWQSSQCEDNASLREALTLYKYDSAGSRMFEELAAGSDRFYATLPWQPLTVQPECPVTLKDVSDL
>Mature_235_residues
MNKEEQYLLFALSAPMEILNQSCKPAHDSPKMYTGIKEFDLSSSWGINNRDDLIQTIYQMTDDGHANDLAGLYLTWQRSS
PEEWKALIAGGSERGLIYTQFVAQTAMCCGEGGIKAWDYVRMGFLSRAGVLNNWLTEEESLWLQSRVYARAHHYYHSWMH
YFSAYSLGRLYWQSSQCEDNASLREALTLYKYDSAGSRMFEELAAGSDRFYATLPWQPLTVQPECPVTLKDVSDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeR [H]

Homologues:

Organism=Escherichia coli, GI1786868, Length=235, Percent_Identity=96.5957446808511, Blast_Score=478, Evalue=1e-136,
Organism=Escherichia coli, GI1786865, Length=235, Percent_Identity=59.5744680851064, Blast_Score=289, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009677 [H]

Pfam domain/function: PF06889 DUF1266 [H]

EC number: NA

Molecular weight: Translated: 26939; Mature: 26939

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKEEQYLLFALSAPMEILNQSCKPAHDSPKMYTGIKEFDLSSSWGINNRDDLIQTIYQM
CCCCCEEEEEEECCCHHHHCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCHHHHHHHHHHH
TDDGHANDLAGLYLTWQRSSPEEWKALIAGGSERGLIYTQFVAQTAMCCGEGGIKAWDYV
CCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHH
RMGFLSRAGVLNNWLTEEESLWLQSRVYARAHHYYHSWMHYFSAYSLGRLYWQSSQCEDN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ASLREALTLYKYDSAGSRMFEELAAGSDRFYATLPWQPLTVQPECPVTLKDVSDL
HHHHHHHHHHEECCHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCEECCCCCCC
>Mature Secondary Structure
MNKEEQYLLFALSAPMEILNQSCKPAHDSPKMYTGIKEFDLSSSWGINNRDDLIQTIYQM
CCCCCEEEEEEECCCHHHHCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCHHHHHHHHHHH
TDDGHANDLAGLYLTWQRSSPEEWKALIAGGSERGLIYTQFVAQTAMCCGEGGIKAWDYV
CCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHH
RMGFLSRAGVLNNWLTEEESLWLQSRVYARAHHYYHSWMHYFSAYSLGRLYWQSSQCEDN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ASLREALTLYKYDSAGSRMFEELAAGSDRFYATLPWQPLTVQPECPVTLKDVSDL
HHHHHHHHHHEECCHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]