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The map label for this gene is ybgJ

Identifier: 30062124

GI number: 30062124

Start: 608924

End: 609580

Strand: Reverse

Name: ybgJ

Synonym: S0599

Alternate gene names: 30062124

Gene position: 609580-608924 (Counterclockwise)

Preceding gene: 30062125

Following gene: 30062123

Centisome position: 13.25

GC content: 57.23

Gene sequence:

>657_bases
GTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTGCTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCA
GAAACGGATCTGGCGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCCGGCATGAACAATATCA
CGGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGCTGGTGGGAGGAGAGCGAGGCC
CTGGAACCTGAGTCTCGCTTTATTGAAATTCCGGTGGTTTACGGTGGTGCAGGCGGACCGGATTTGGCGGTGGTCGCGGC
GTATTGCGGGTTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAAC
CGGGCTTCCCGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTGCTCGTTCCGGCA
GGTTCTGTCGGGATCGGCGGGCCGCAGACTGGTGTTTATCCGCTGGCAACGCCGGGTGGCTGGCAGTTGATTGGTCATAC
CTCACTCAGCCTGTTTGATCCGGCGCGTGACGAACCCATCTTATTACGTCCGGGAGACAGCGTGCGATTTGTACCGCAGA
AGGAGGGAATATGCTGA

Upstream 100 bases:

>100_bases
ATTCGCGCATTGAGCGAGTGGCTGAATGAAAATACCGATCTTGATGTGACCTTTATTGATATTCCTAATCCTGCATAACG
AATAATCAGAGGGATCGAAA

Downstream 100 bases:

>100_bases
AGATTATTCGTGCGGGCATGTACACCACTGTGCAGGATGGCGGTCGTCACGGTTTTTGCCAGTCGGGTATCAGCCACTGT
GGCGCACTGGATATGCCTGC

Product: putative carboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAGGPDLAVVAAYCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGIC

Sequences:

>Translated_218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAGGPDLAVVAAYCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGIC
>Mature_218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAGGPDLAVVAAYCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGIC

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=218, Percent_Identity=99.0825688073395, Blast_Score=435, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 23987; Mature: 23987

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP
CCCCEEEEEECEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEECC
ESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAYCGLSEKQVVELH
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHH
SSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGG
HHHEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC
WQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGIC
EEEEECCEEEEECCCCCCCEEEECCCCEEEECCCCCCC
>Mature Secondary Structure
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP
CCCCEEEEEECEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEECC
ESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAYCGLSEKQVVELH
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHH
SSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGG
HHHEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC
WQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGIC
EEEEECCEEEEECCCCCCCEEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]