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The map label for this gene is ybdF

Identifier: 30062033

GI number: 30062033

Start: 503535

End: 503903

Strand: Reverse

Name: ybdF

Synonym: S0494

Alternate gene names: 30062033

Gene position: 503903-503535 (Counterclockwise)

Preceding gene: 30062034

Following gene: 30062032

Centisome position: 10.96

GC content: 46.88

Gene sequence:

>369_bases
ATGGATAAGCAATCACTGCACGAAACGGCGAAACGCCTAGCTCTTGAGTTACCCTTTGTCGAGCTTTGCTGGCCTTTTGG
CCCGGAGTTCGATGTTTTTAAAATTGGCGGCAAGATTTTTATGCTGTCGTCGGAGCTACGCGGCGTCCCCTTTATCAATC
TGAAGTCCGATCCACAAAAATCCCTGTTAAATCAGCAAATATACCCAAGCATTAAGCCAGGGTATCACATGAATAAAAAG
CACTGGATTTCGGTGTATTCCGGCGAGGAAATCTCCGAAGCGTTACTTCGCGATCTGATCAACGATTCGTGGAATCTGGT
GGTTGATGGTCTGGCTAAACGCGATCAAAAAAGAGTGCGTCCAGGCTAA

Upstream 100 bases:

>100_bases
TTTATCTGGCGACGCTGGTTCTCGCTGGCGGATTAAACGTCGATTATCGCCGAACTTCGCGGCATACTTTGCTTATTCTC
CTTCGCCTAAAGGAACGTTT

Downstream 100 bases:

>100_bases
AGCGGGAATCTATAGCGCATTTTTCTCGCTTACCATTTCTCGTTGAACCTTGTAATCTGCTGGCACGCAAAATTACTTAC
ACATGGAGTCTTTATGGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYSGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG

Sequences:

>Translated_122_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYSGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG
>Mature_122_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYSGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG

Specific function: Unknown

COG id: COG2315

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786793, Length=122, Percent_Identity=99.1803278688525, Blast_Score=249, Evalue=3e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007351 [H]

Pfam domain/function: PF04237 DUF419 [H]

EC number: NA

Molecular weight: Translated: 14040; Mature: 14040

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCEEECCCCHHH
SLLNQQIYPSIKPGYHMNKKHWISVYSGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR
HHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCC
PG
CC
>Mature Secondary Structure
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCEEECCCCHHH
SLLNQQIYPSIKPGYHMNKKHWISVYSGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR
HHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCC
PG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]