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The map label for this gene is araJ

Identifier: 30061892

GI number: 30061892

Start: 339945

End: 341126

Strand: Reverse

Name: araJ

Synonym: S0341

Alternate gene names: 30061892

Gene position: 341126-339945 (Counterclockwise)

Preceding gene: 30061893

Following gene: 30061890

Centisome position: 7.42

GC content: 50.51

Gene sequence:

>1182_bases
ATGAAAAAAGTCATTTTATCTTTGGCTCTGGGCACGTTTGGTTTGGGGATGGCCGAATTTGGCATTATGAGCGTGCTCAC
GGAGCTGGCGCATAACGTAGGAATTTCGATTCCTGCTGCCGGGCATATGATCTCGTATTATGCACTGGTGGTGGTGGTCG
GTGCGCCAATCATCGCACTCTTTTCCAGCCGCTACTCACTCAAACATATCTTGTTGTTTCTGGTGGCGTTGTGCGTCATT
GGCAACGCCATGTTCACGCTCTCTTCGTCTTACCTGATGCTCGCCATTGGTCGGCTGGTATCCGGCTTTCCGCATGGCGC
ATTTTTTGGCGTCGGAGCGATCGTGTTATCAAAAATTATCAAACCCGGAAAAGTCACCGCCGCCGTGGCGGGGATGGTTT
CCGGGATGACAGTCGCCAATTTGCTGGGCATTCCGCTGGGAACGTATTTAAGTCAGGAATGCTGGCGTTACACCTTTTTA
TTGATCGCTGTTTTTAATATTGCGGTGATGGCATCGGTCTATTTTTGGGTGCCAGATATTCGCGACGAGGCGAAAGGAAA
TCTGCGCGAACAATTTCACTTTTTGCGCAGCCCGGCCCCGTGGTTAATTTTCGCCGCCACGATGTTTGGCAACGCAGGTG
TGTTTGCCTGGTTCAGCTACGTAAAGCCATACATGATGTTTATTTCCGGTTTTTCGGAAACGGCGATGACCTTTATTATG
ATGTTAGTTGGGCTAGGGATGGTGCTGGGAAATATGCTAAGTGGCAGGATTTCAGGACGTTATTCACCACTGCGCATTGC
AGCAGTGACTGACTTTATCATTGTACTGGCACTGCTGATGCTCTTTTTCTGCGGCGGCATGAAAACAACGTCGCTTATTT
TTGCTTTTATTTGTTGCGCGGGATTATTTGCCCTTTCAGCACCTCTGCAAATATTGTTACTGCAAAATGCCAAAGGAGGA
GAGTTATTAGGTGCCGCAGGTGGGCAAATAGCGTTTAACCTCGGTAGCGCCGTCGGCGCATATTGCGGAGGTATGATGCT
GACGCTGGGGCTGGCATATAATTACGTGGCGCTGCCTGCCGCCCTGCTTTCGTTTGCTGCGATGTCATCGTTGCTGCTGT
ATGGTCGCTATAAGCGCCAGCAAGCGGCGGATAGTCCGGTGCTGGCGAAACCACTGGGGTAG

Upstream 100 bases:

>100_bases
AGGGGTGAATTATCTCTTGGCCTTGCTGGTCGTTATCCTGCAAGCTATCACTTTATTGGCTACGGTGATTGGTAGCCGTT
CTGGTGGTTGTGATGGTGGT

Downstream 100 bases:

>100_bases
ATTACTGTCACGGTGCGCGTTGCTTATTGCCGGATGCGGCGTGAACGCCTTATCCGCCCTACGCGGTTCTGGCACATTTT
GTAGGCCTGATAAGACGCGG

Product: MFS transport protein AraJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKKVILSLALGTFGLGMAEFGIMSVLTELAHNVGISIPAAGHMISYYALVVVVGAPIIALFSSRYSLKHILLFLVALCVI
GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQECWRYTFL
LIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIM
MLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGG
ELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADSPVLAKPLG

Sequences:

>Translated_393_residues
MKKVILSLALGTFGLGMAEFGIMSVLTELAHNVGISIPAAGHMISYYALVVVVGAPIIALFSSRYSLKHILLFLVALCVI
GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQECWRYTFL
LIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIM
MLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGG
ELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADSPVLAKPLG
>Mature_393_residues
MKKVILSLALGTFGLGMAEFGIMSVLTELAHNVGISIPAAGHMISYYALVVVVGAPIIALFSSRYSLKHILLFLVALCVI
GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQECWRYTFL
LIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIM
MLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGG
ELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADSPVLAKPLG

Specific function: May be involved in either the transport or processing of arabinose polymers [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786595, Length=394, Percent_Identity=98.7309644670051, Blast_Score=738, Evalue=0.0,
Organism=Escherichia coli, GI1787947, Length=379, Percent_Identity=31.6622691292876, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI145693198, Length=348, Percent_Identity=25.5747126436782, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787808, Length=259, Percent_Identity=25.0965250965251, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41854; Mature: 41854

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKKVILSLALGTFGLGMAEFGIMSVLTELAHNVGISIPAAGHMISYYALVVVVGAPIIAL
CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKII
HHCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
KPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQECWRYTFLLIAVFNIAVMASVYFWVPDI
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
RDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIM
HHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
MLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCA
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPA
HHHHHHCCHHEEEEECCCCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLSFAAMSSLLLYGRYKRQQAADSPVLAKPLG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1744033; 9278503 [H]