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The map label for this gene is glaB

Identifier: 29349659

GI number: 29349659

Start: 5601336

End: 5603183

Strand: Reverse

Name: glaB

Synonym: BT_4251

Alternate gene names: 29349659

Gene position: 5603183-5601336 (Counterclockwise)

Preceding gene: 29349660

Following gene: 29349656

Centisome position: 89.5

GC content: 42.91

Gene sequence:

>1848_bases
ATGAGAACATTCCTATCATTAAAGACATGCTTACTATCTGCACTTTTACTTTGCGTAAACAGCATTGCAGCAAGCAAGAT
TATTTCCGTATCTGATTTCGGTTTGAAACCCGACAGCCGTATCAACGCAGTTCCATTTATACAAAAGGCAATCGATGCTT
GCAAGCAACATCCCGGTTCCACGCTTGTTTTCCCAAAAGGAAGATATGACTTCTGGGCACAACATGCTATCGAAAAAGAT
TATTACGAAACGAACACCTACGATGTTAATCCCAAAATTCTCGCCGTGCTATTGGAGCAGATCAATGATCTGACGATTGA
CGGTAATGGTTCTGAGTTTATTATGCATGGACGGATGCAACCATTCACTTTGGATCATTGCCGGAACATTACTTTAAAGA
ATTTCTCCGTCGATTGGGAAATCCCATTAACTGCGCAAGGTATTGTCACTCAATCTACCTCCGAATACCTTGAGATCGAA
ATCGACTCCCACCAATATCCTTATATCATAGAAAACAAACGACTGACTTTTGTCGGCGAAGGATGGAAAAGCAGTCTTTG
GGCGATCATGCAGTTTGATCCCGACACCCATCTCGTCCTGCCAAATACAGGTGATAACTTAGGCTGGCGCTCATACGATG
CAACAGAAATAAACCCCGGATTAATACGCTTATCCGATCCTAAAAAGGAGGCTGATAAATTCTTCCCTGCGCCGGGTACG
GTCCTTGTGTTACGACACAGCACCAGAGATCACGCCGGTATCTTCATTTACCACAGTATGGATACAAAGCTAGAGAACGT
AAAGCTATTCCATACCTGCGGACTGGGAATTCTGTCACAATATAGCAAGAATATCTCTTTCAATGATGTACATATCATCC
CTAACACTTCCAAGAAACGTGTGCTGAGCGGACATGACGACGGTTTCCACTTCATGGGATGCAGCGGATTACTCAAGATT
GAGAACTGTAGTTGGGCAGGATTGATGGATGACCCTATTAACATCCATGGAACATGTTCCCGTATTATGGAAGTTCTTTC
TCCTACCCGTATCAAATGCAAGTTCATGCAAGACATGAGTGAAGGGATGGAATGGGGACGCCCAGACGAAACAATCGGAT
TTATAGAGCATAAAACCATGCGTACCGTAGCTACCGGTAAAATGAATAAATTTGAAGCACTGAATAAAGCTGAATTTATC
ATCGAATTATCAGTACCACTTCCAGCCGGAGTGGAAGCCGGATATGTAATAGAGAATCTGACCTGCACACCTGATGCAGA
AATACGCAACTGCCATTTCGGAAGTTGCCGGGCACGTGGTCTGCTTGTATCTACTCCCGGCAAGGTTATTATCGAGAACA
ATGTATTCGAATCCAGCGGCTCTGCCATTCTGATTGCCGGAGACGCAAACGCATGGTATGAATCAGGAGCTGTCAAAGAT
GTGCTGATACGCAACAATGATTTCCGTTACCCTTGCAATTCTTCAATTTATCAATTCTGTGAAGCTGTGATTAGCATTGA
CCCGGAAATACCGACACCGGAACAGAAGTACCCCTATCATCGCAATATCCGCATTATGGATAATACCTTCCACCTATTTG
ATTATCCGATACTCTTCGCACGTTCGGTAAACGGGCTCACCTTCTCCTCCAATACACTCATACGTGATACGACTTACCAG
CCTTATCACTATCGCAAAGAAGGTATTACGCTGGAAGCATGTAAATCTGTAGTTATTTCAAACAATAAGATTGAAGGGGA
TGTATTAGGACGTATTGTTACAATTGAAAAGATGAAACCTTCGGATGTCAAGATTAGCAAGAATCCTTTCTTTAAACTGA
AAAAATAA

Upstream 100 bases:

>100_bases
AAGTATTCCTGTAGAAATACCGGATTTCACCAGAGGTGTCTGGAAAAAACACAAACATTAGATTTTACCTATTTACCCCA
ATTAAACTATAAAAAAACAC

Downstream 100 bases:

>100_bases
GAAACACCATATAGCCAATTAAACGTATTCAGACTCAAGCATGGGTATGAATACGTTTGAGCCTTTATCCCATAAATACG
ACAAATAAAGGAAGGTTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: BtGal110B; Exo-alpha-galactosidase B

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MRTFLSLKTCLLSALLLCVNSIAASKIISVSDFGLKPDSRINAVPFIQKAIDACKQHPGSTLVFPKGRYDFWAQHAIEKD
YYETNTYDVNPKILAVLLEQINDLTIDGNGSEFIMHGRMQPFTLDHCRNITLKNFSVDWEIPLTAQGIVTQSTSEYLEIE
IDSHQYPYIIENKRLTFVGEGWKSSLWAIMQFDPDTHLVLPNTGDNLGWRSYDATEINPGLIRLSDPKKEADKFFPAPGT
VLVLRHSTRDHAGIFIYHSMDTKLENVKLFHTCGLGILSQYSKNISFNDVHIIPNTSKKRVLSGHDDGFHFMGCSGLLKI
ENCSWAGLMDDPINIHGTCSRIMEVLSPTRIKCKFMQDMSEGMEWGRPDETIGFIEHKTMRTVATGKMNKFEALNKAEFI
IELSVPLPAGVEAGYVIENLTCTPDAEIRNCHFGSCRARGLLVSTPGKVIIENNVFESSGSAILIAGDANAWYESGAVKD
VLIRNNDFRYPCNSSIYQFCEAVISIDPEIPTPEQKYPYHRNIRIMDNTFHLFDYPILFARSVNGLTFSSNTLIRDTTYQ
PYHYRKEGITLEACKSVVISNNKIEGDVLGRIVTIEKMKPSDVKISKNPFFKLKK

Sequences:

>Translated_615_residues
MRTFLSLKTCLLSALLLCVNSIAASKIISVSDFGLKPDSRINAVPFIQKAIDACKQHPGSTLVFPKGRYDFWAQHAIEKD
YYETNTYDVNPKILAVLLEQINDLTIDGNGSEFIMHGRMQPFTLDHCRNITLKNFSVDWEIPLTAQGIVTQSTSEYLEIE
IDSHQYPYIIENKRLTFVGEGWKSSLWAIMQFDPDTHLVLPNTGDNLGWRSYDATEINPGLIRLSDPKKEADKFFPAPGT
VLVLRHSTRDHAGIFIYHSMDTKLENVKLFHTCGLGILSQYSKNISFNDVHIIPNTSKKRVLSGHDDGFHFMGCSGLLKI
ENCSWAGLMDDPINIHGTCSRIMEVLSPTRIKCKFMQDMSEGMEWGRPDETIGFIEHKTMRTVATGKMNKFEALNKAEFI
IELSVPLPAGVEAGYVIENLTCTPDAEIRNCHFGSCRARGLLVSTPGKVIIENNVFESSGSAILIAGDANAWYESGAVKD
VLIRNNDFRYPCNSSIYQFCEAVISIDPEIPTPEQKYPYHRNIRIMDNTFHLFDYPILFARSVNGLTFSSNTLIRDTTYQ
PYHYRKEGITLEACKSVVISNNKIEGDVLGRIVTIEKMKPSDVKISKNPFFKLKK
>Mature_615_residues
MRTFLSLKTCLLSALLLCVNSIAASKIISVSDFGLKPDSRINAVPFIQKAIDACKQHPGSTLVFPKGRYDFWAQHAIEKD
YYETNTYDVNPKILAVLLEQINDLTIDGNGSEFIMHGRMQPFTLDHCRNITLKNFSVDWEIPLTAQGIVTQSTSEYLEIE
IDSHQYPYIIENKRLTFVGEGWKSSLWAIMQFDPDTHLVLPNTGDNLGWRSYDATEINPGLIRLSDPKKEADKFFPAPGT
VLVLRHSTRDHAGIFIYHSMDTKLENVKLFHTCGLGILSQYSKNISFNDVHIIPNTSKKRVLSGHDDGFHFMGCSGLLKI
ENCSWAGLMDDPINIHGTCSRIMEVLSPTRIKCKFMQDMSEGMEWGRPDETIGFIEHKTMRTVATGKMNKFEALNKAEFI
IELSVPLPAGVEAGYVIENLTCTPDAEIRNCHFGSCRARGLLVSTPGKVIIENNVFESSGSAILIAGDANAWYESGAVKD
VLIRNNDFRYPCNSSIYQFCEAVISIDPEIPTPEQKYPYHRNIRIMDNTFHLFDYPILFARSVNGLTFSSNTLIRDTTYQ
PYHYRKEGITLEACKSVVISNNKIEGDVLGRIVTIEKMKPSDVKISKNPFFKLKK

Specific function: Alpha-galactosidase. Removes both branched alpha-1,3- linked galactose residues of blood group B antigens and linear alpha-1,3-linked galactose structures

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 PbH1 repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLAB_BACTN (Q89ZX0)

Other databases:

- EMBL:   AM109957
- EMBL:   AE015928
- RefSeq:   NP_813162.1
- ProteinModelPortal:   Q89ZX0
- GeneID:   1074743
- GenomeReviews:   AE015928_GR
- KEGG:   bth:BT_4251
- NMPDR:   fig|226186.1.peg.4249
- HOGENOM:   HBG345842
- OMA:   LTWTPEV
- ProtClustDB:   CLSK823424
- BioCyc:   BTHE226186:BT_4251-MONOMER
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050
- Gene3D:   G3DSA:2.160.20.10
- SMART:   SM00710

Pfam domain/function: SSF51126 Pectin_lyas_like

EC number: =3.2.1.22

Molecular weight: Translated: 69373; Mature: 69373

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFLSLKTCLLSALLLCVNSIAASKIISVSDFGLKPDSRINAVPFIQKAIDACKQHPGS
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC
TLVFPKGRYDFWAQHAIEKDYYETNTYDVNPKILAVLLEQINDLTIDGNGSEFIMHGRMQ
EEEEECCCCHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHCCEEECCCCCEEEEECCCC
PFTLDHCRNITLKNFSVDWEIPLTAQGIVTQSTSEYLEIEIDSHQYPYIIENKRLTFVGE
CEEHHHHCCCEEEEEEEEEECCEEECCEEECCCCCEEEEEECCCCCCEEECCCEEEEEEC
GWKSSLWAIMQFDPDTHLVLPNTGDNLGWRSYDATEINPGLIRLSDPKKEADKFFPAPGT
CCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCE
VLVLRHSTRDHAGIFIYHSMDTKLENVKLFHTCGLGILSQYSKNISFNDVHIIPNTSKKR
EEEEEECCCCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCC
VLSGHDDGFHFMGCSGLLKIENCSWAGLMDDPINIHGTCSRIMEVLSPTRIKCKFMQDMS
EECCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHH
EGMEWGRPDETIGFIEHKTMRTVATGKMNKFEALNKAEFIIELSVPLPAGVEAGYVIENL
HHHCCCCCCCEEEEEECCCEEEECCCCCHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEE
TCTPDAEIRNCHFGSCRARGLLVSTPGKVIIENNVFESSGSAILIAGDANAWYESGAVKD
ECCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCEEECCCCEEEEECCCCCHHCCCCEEE
VLIRNNDFRYPCNSSIYQFCEAVISIDPEIPTPEQKYPYHRNIRIMDNTFHLFDYPILFA
EEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECEEEEECCCEEEE
RSVNGLTFSSNTLIRDTTYQPYHYRKEGITLEACKSVVISNNKIEGDVLGRIVTIEKMKP
ECCCCEEECCCEEEECCCCCCCEECCCCEEHHHHHHEEECCCCCCCCCEEEEEEEEECCC
SDVKISKNPFFKLKK
CCEEECCCCCEEECC
>Mature Secondary Structure
MRTFLSLKTCLLSALLLCVNSIAASKIISVSDFGLKPDSRINAVPFIQKAIDACKQHPGS
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC
TLVFPKGRYDFWAQHAIEKDYYETNTYDVNPKILAVLLEQINDLTIDGNGSEFIMHGRMQ
EEEEECCCCHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHCCEEECCCCCEEEEECCCC
PFTLDHCRNITLKNFSVDWEIPLTAQGIVTQSTSEYLEIEIDSHQYPYIIENKRLTFVGE
CEEHHHHCCCEEEEEEEEEECCEEECCEEECCCCCEEEEEECCCCCCEEECCCEEEEEEC
GWKSSLWAIMQFDPDTHLVLPNTGDNLGWRSYDATEINPGLIRLSDPKKEADKFFPAPGT
CCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCE
VLVLRHSTRDHAGIFIYHSMDTKLENVKLFHTCGLGILSQYSKNISFNDVHIIPNTSKKR
EEEEEECCCCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCC
VLSGHDDGFHFMGCSGLLKIENCSWAGLMDDPINIHGTCSRIMEVLSPTRIKCKFMQDMS
EECCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHH
EGMEWGRPDETIGFIEHKTMRTVATGKMNKFEALNKAEFIIELSVPLPAGVEAGYVIENL
HHHCCCCCCCEEEEEECCCEEEECCCCCHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEE
TCTPDAEIRNCHFGSCRARGLLVSTPGKVIIENNVFESSGSAILIAGDANAWYESGAVKD
ECCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCEEECCCCEEEEECCCCCHHCCCCEEE
VLIRNNDFRYPCNSSIYQFCEAVISIDPEIPTPEQKYPYHRNIRIMDNTFHLFDYPILFA
EEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECEEEEECCCEEEE
RSVNGLTFSSNTLIRDTTYQPYHYRKEGITLEACKSVVISNNKIEGDVLGRIVTIEKMKP
ECCCCEEECCCEEEECCCCCCCEECCCCEEHHHHHHEEECCCCCCCCCEEEEEEEEECCC
SDVKISKNPFFKLKK
CCEEECCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663928