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The map label for this gene is yciO [C]

Identifier: 29349536

GI number: 29349536

Start: 5412640

End: 5413254

Strand: Reverse

Name: yciO [C]

Synonym: BT_4128

Alternate gene names: 29349536

Gene position: 5413254-5412640 (Counterclockwise)

Preceding gene: 29349537

Following gene: 29349532

Centisome position: 86.47

GC content: 47.8

Gene sequence:

>615_bases
ATGCTTCTGAAACTGTACGATAAAAACAATAACCCGCAGGACTTGCAACGGGTAACCGACATCCTGAACGACGGCGGACT
GATCATCTATCCTACGGATACGATGTACGCCATCGGATGCCACGGGCTGAAAGAACGTGCTATTGAACGGATTTGCCGGA
TCAAAGATATTGATCCGCGCAAAAACAACCTGTCTATCATCTGCTACGATCTAAGCAGTATCAGCGAGTATGCCAAAGTG
GGTAATAATGAGTTCAAGCTCATGAAGCATAATCTCCCCGGTCCGTTCACGTTTATCCTGAATGGCACCAACCGGCTGCC
CAAAATCTTCCGCAACCGAAAAGAGGTGGGTATCCGTATGCCGGACAACAACATCATTCGTGAAATCGCCCGCTTACTGG
ATGCTCCTATTATGACCACCACACTGCCATATGATGAGCATGAAGATCTGGAATATATGACCGATCCCGAACTGATTGAC
GAAAAGTTCGGCGATATCGTGGATCTGGTGATCGACGGAGGAATAGGAGGCATAGAACCTTCTACAGTAGTGAAGTGCAC
AGAAGATGAACCGGAAATTGTCCGTCAGGGAAAAGGCTGGCTGGAAGGGATTTAA

Upstream 100 bases:

>100_bases
CCAACAAAGATTCCATCAAACAGAAAGTGACGGAAAAAGCTACAGAGAAAGCACTTGATTTCTTAAAGAAGAAACTTAAA
TAAGAAAAGGAGAAGAGAGT

Downstream 100 bases:

>100_bases
TCCCGAAGACTATTAACTTAGAGAATATATAAATCAGGCACGGACTACACGGATTTCACGGTTTTAAAAGATTACATATC
TAAAAAACGTGTTAATCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MLLKLYDKNNNPQDLQRVTDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKDIDPRKNNLSIICYDLSSISEYAKV
GNNEFKLMKHNLPGPFTFILNGTNRLPKIFRNRKEVGIRMPDNNIIREIARLLDAPIMTTTLPYDEHEDLEYMTDPELID
EKFGDIVDLVIDGGIGGIEPSTVVKCTEDEPEIVRQGKGWLEGI

Sequences:

>Translated_204_residues
MLLKLYDKNNNPQDLQRVTDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKDIDPRKNNLSIICYDLSSISEYAKV
GNNEFKLMKHNLPGPFTFILNGTNRLPKIFRNRKEVGIRMPDNNIIREIARLLDAPIMTTTLPYDEHEDLEYMTDPELID
EKFGDIVDLVIDGGIGGIEPSTVVKCTEDEPEIVRQGKGWLEGI
>Mature_204_residues
MLLKLYDKNNNPQDLQRVTDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKDIDPRKNNLSIICYDLSSISEYAKV
GNNEFKLMKHNLPGPFTFILNGTNRLPKIFRNRKEVGIRMPDNNIIREIARLLDAPIMTTTLPYDEHEDLEYMTDPELID
EKFGDIVDLVIDGGIGGIEPSTVVKCTEDEPEIVRQGKGWLEGI

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=199, Percent_Identity=40.7035175879397, Blast_Score=151, Evalue=4e-38,
Organism=Drosophila melanogaster, GI78707274, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23220; Mature: 23220

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKLYDKNNNPQDLQRVTDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKDIDPR
CEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCC
KNNLSIICYDLSSISEYAKVGNNEFKLMKHNLPGPFTFILNGTNRLPKIFRNRKEVGIRM
CCCCEEEEEEHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCHHHHHHCCHHHCEEEC
PDNNIIREIARLLDAPIMTTTLPYDEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGIEP
CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHEEHHEECCCCCCCC
STVVKCTEDEPEIVRQGKGWLEGI
CCEEEECCCCHHHHHCCCCHHCCC
>Mature Secondary Structure
MLLKLYDKNNNPQDLQRVTDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKDIDPR
CEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCC
KNNLSIICYDLSSISEYAKVGNNEFKLMKHNLPGPFTFILNGTNRLPKIFRNRKEVGIRM
CCCCEEEEEEHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCHHHHHHCCHHHCEEEC
PDNNIIREIARLLDAPIMTTTLPYDEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGIEP
CCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHEEHHEECCCCCCCC
STVVKCTEDEPEIVRQGKGWLEGI
CCEEEECCCCHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]