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The map label for this gene is sefC [H]

Identifier: 29144775

GI number: 29144775

Start: 4681221

End: 4683773

Strand: Direct

Name: sefC [H]

Synonym: t4536

Alternate gene names: 29144775

Gene position: 4681221-4683773 (Clockwise)

Preceding gene: 29144774

Following gene: 29144776

Centisome position: 97.69

GC content: 35.92

Gene sequence:

>2553_bases
ATGAAGAAAACCACAATTACTCTATTTGTTTTAACCAGTGTATTTCACTCTGGAAATGTTTTCTCCAGACAATATAATTT
CGACTATGGAAGTTTGAGTCTTCCTCCCGGTGAGAATGCATCTTTTCTAAGTGTTGAAACGCTTCCTGGTAATTATGTTG
TTGATGTATATTTGAATAATCAGTTAAAAGAAACTACTGAGTTGTATTTCAAATCAATGACTCAGACTCTAGAACCATGC
TTAACAAAAGAAAAACTTATAAAGTATGGGATCGCCATCCAGGAGCTTCATGGGTTGCAGTTTGATAATGAACAATGCGT
TCTCTTAGAGCATTCTCCTCTTAAATATACTTATAACGCGGCTAACCAAAGTTTGCTTTTAAATGCACCATCTAAAATTC
TATCTCCAATAGACAGTGAAATTGCTGATGAAAATATCTGGGATGATGGCATTAACGCTTTTCTTTTAAATTACAGAGCT
AATTATTTGCATTCTAAGGTTGGAGGAGAAGATTCATACTTTGGTCAAATTCAACTTGGTTTTAATTTTGGTCCCTGGCG
GCTAAGGAATCTATCATCTTGGCAAAACTTGTCAAGCGAAAAAAAATTTGAATCAGCATATATTTATGCTGAGCGAGGTT
TAAAAAAAATAAAGAGCAAACTAACAGTTGGGGACAAATATACCAGTGCAGATTTATTCGATAGCGTACCATTTAGAGGC
TTTTCTTTAAATAAAGATGAAAGTATGATACCTTTCTCACAGAGAACATATTATCCAACAATACGTGGTATTGCGAAAAC
CAATGCGACTGTAGAAGTAAGACAAAATGGATACTTGATATATTCTACTTCAGTCCCCCCCGGGCAATTCGAGATAGGTA
GAGAACAAATTGCTGATCTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTT
GGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGGGTTCTTGATGTTAGCAT
TTATGAAAAAAATGGGCAGGTCCAAAACTATACAGTGCCATATTCAACTCCTGTATTATCTTTGCCTGATGGATATTCTA
AATATAGTGTAACTATTGGTAGATACAGGGAGGTTAACAATGATTATATCGATCCTGTTTTTTTTGAAGGGACTTATATA
TATGGTCTGCCTTATGGGTTTACTTTATTTGGTGGAGTGCAATGGGCAAATATTTATAATTCATACGCCATAGGCGCAAG
TAAAGATATTGGTGAGTATGGTGCTCTGTCTTTTGACTGGAAAACATCTGTTTCGAAGACTGATACATCCAATGAAAATG
GTCATGCATATGGGATTAGATACAATAAAAATATCGCTCAGACAAACACCGAAGTATCTTTGGCTAGTCATTACTATTAT
TCGAAAAATTATAGAACTTTTTCTGAAGCAATTCATAGTAGCGAGCATGATGAATTTTACGATAAAAATAAGAAATCAAC
AACCTCTATGTTATTAAGTCAGGCATTAGGATCTCTGGGTTCTGTTAACTTAAGCTACAATTATGATAAATATTGGAAAC
ATGAAGGTAAAAAATCAATAATTGCTAGTTATGGGAAGAATTTAAATGGTGTTTCGTTATCGCTTTCATATACGAAAAGT
ACATCAAAGATTAGTGAAGAAAATGAAGATTTATTCAGTTTTCTACTCAGTGTACCTTTGCAAAAACTTACAAATCATGA
AATGTATGCTACATATCAAAACTCATCCTCTTCAAAGCATGATATGAATCATGATTTAGGTATTACTGGTGTGGCATTTG
ATAGCCAATTGACATGGCAAGCAAGAGGGCAAATAGAAGATAAATCGAAAAATCAAAAGGCTACATTTTTAAATGCTTCT
TGGCGAGGTACTTATGGGGAGATCGGAGCAAACTATAGTCATAATGAAATAAATCGTGATATTGGGATGAATGTTTCTGG
TGGGGTGATTGCTCATTCATCAGGAATTACGTTTGGTCAGAGTATATCGGATACTGCTGCACTGGTCGAGGCTAAAGGTG
TAAGTGGGGCAAAAGTTCTGGGCCTACCAGGTGTTAGAACCGATTTTAGAGGCTATACAATATCCAGTTATCTTACTCCA
TATATGAATAACTTCATATCTATAGATCCAACAACGTTACCAATAAATACGGATATTAGGCAAACTGATATTCAAGTAGT
TCCTACCGAAGGTGCTATTGTAAAAGCTGTATATAAAACAAGCGTGGGTACTAATGCATTAATTAGAATTACAAGAACAA
ATGGAAAGCCACTAGCTCTTAGCACAGTTCTTTCACTTAAGAATAATGATGGAGTAATCCAATCAACATCTATTGTTGGC
GAAGATGGTCAGGCATATGTATCTGGATTGTCAGGAGTGCAAAAATTAATCGCTTCGTGGGGGAATAAGCCCTCCGATAC
TTGTACAGTTTTTTACTCTCTTCCCGATAAAAACAAAGGTCAGATTAGCTTTTTAAATGGAGTGTGCAAATGA

Upstream 100 bases:

>100_bases
GCTCAATTACCTGGTGGAGTACATAGTAAAATAACTTTGACTATTTTGGATGATAACGGCGCTGAAATTATAAGAGATTA
TTATTTTAAGGTGTAAACAA

Downstream 100 bases:

>100_bases
ATCAGTATAATTCGTCAATACCTAAGTTCATTGTCTCTGTTTTTCTGATTGTTACTGGTTTTTTCAGCTCAACTATTAAA
GCACAAGAACTTAAATTAAT

Product: outer membrane fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 850; Mature: 850

Protein sequence:

>850_residues
MKKTTITLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPGNYVVDVYLNNQLKETTELYFKSMTQTLEPC
LTKEKLIKYGIAIQELHGLQFDNEQCVLLEHSPLKYTYNAANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRA
NYLHSKVGGEDSYFGQIQLGFNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRG
FSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIADLGVGVGVGVGVGVGVGVGVGV
GVGVGVGVGVGVGVGVGVGVGVLDVSIYEKNGQVQNYTVPYSTPVLSLPDGYSKYSVTIGRYREVNNDYIDPVFFEGTYI
YGLPYGFTLFGGVQWANIYNSYAIGASKDIGEYGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYY
SKNYRTFSEAIHSSEHDEFYDKNKKSTTSMLLSQALGSLGSVNLSYNYDKYWKHEGKKSIIASYGKNLNGVSLSLSYTKS
TSKISEENEDLFSFLLSVPLQKLTNHEMYATYQNSSSSKHDMNHDLGITGVAFDSQLTWQARGQIEDKSKNQKATFLNAS
WRGTYGEIGANYSHNEINRDIGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTP
YMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLALSTVLSLKNNDGVIQSTSIVG
EDGQAYVSGLSGVQKLIASWGNKPSDTCTVFYSLPDKNKGQISFLNGVCK

Sequences:

>Translated_850_residues
MKKTTITLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPGNYVVDVYLNNQLKETTELYFKSMTQTLEPC
LTKEKLIKYGIAIQELHGLQFDNEQCVLLEHSPLKYTYNAANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRA
NYLHSKVGGEDSYFGQIQLGFNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRG
FSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIADLGVGVGVGVGVGVGVGVGVGV
GVGVGVGVGVGVGVGVGVGVGVLDVSIYEKNGQVQNYTVPYSTPVLSLPDGYSKYSVTIGRYREVNNDYIDPVFFEGTYI
YGLPYGFTLFGGVQWANIYNSYAIGASKDIGEYGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYY
SKNYRTFSEAIHSSEHDEFYDKNKKSTTSMLLSQALGSLGSVNLSYNYDKYWKHEGKKSIIASYGKNLNGVSLSLSYTKS
TSKISEENEDLFSFLLSVPLQKLTNHEMYATYQNSSSSKHDMNHDLGITGVAFDSQLTWQARGQIEDKSKNQKATFLNAS
WRGTYGEIGANYSHNEINRDIGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTP
YMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLALSTVLSLKNNDGVIQSTSIVG
EDGQAYVSGLSGVQKLIASWGNKPSDTCTVFYSLPDKNKGQISFLNGVCK
>Mature_850_residues
MKKTTITLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPGNYVVDVYLNNQLKETTELYFKSMTQTLEPC
LTKEKLIKYGIAIQELHGLQFDNEQCVLLEHSPLKYTYNAANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRA
NYLHSKVGGEDSYFGQIQLGFNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRG
FSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIADLGVGVGVGVGVGVGVGVGVGV
GVGVGVGVGVGVGVGVGVGVGVLDVSIYEKNGQVQNYTVPYSTPVLSLPDGYSKYSVTIGRYREVNNDYIDPVFFEGTYI
YGLPYGFTLFGGVQWANIYNSYAIGASKDIGEYGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYY
SKNYRTFSEAIHSSEHDEFYDKNKKSTTSMLLSQALGSLGSVNLSYNYDKYWKHEGKKSIIASYGKNLNGVSLSLSYTKS
TSKISEENEDLFSFLLSVPLQKLTNHEMYATYQNSSSSKHDMNHDLGITGVAFDSQLTWQARGQIEDKSKNQKATFLNAS
WRGTYGEIGANYSHNEINRDIGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTP
YMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLALSTVLSLKNNDGVIQSTSIVG
EDGQAYVSGLSGVQKLIASWGNKPSDTCTVFYSLPDKNKGQISFLNGVCK

Specific function: Involved in the export and assembly of the sefA fimbrial subunit [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=855, Percent_Identity=30.6432748538012, Blast_Score=394, Evalue=1e-110,
Organism=Escherichia coli, GI1786744, Length=848, Percent_Identity=30.188679245283, Blast_Score=365, Evalue=1e-102,
Organism=Escherichia coli, GI1787172, Length=852, Percent_Identity=30.6338028169014, Blast_Score=362, Evalue=1e-101,
Organism=Escherichia coli, GI1789533, Length=830, Percent_Identity=31.9277108433735, Blast_Score=357, Evalue=2e-99,
Organism=Escherichia coli, GI1788427, Length=801, Percent_Identity=27.7153558052434, Blast_Score=272, Evalue=5e-74,
Organism=Escherichia coli, GI1786332, Length=876, Percent_Identity=26.027397260274, Blast_Score=240, Evalue=2e-64,
Organism=Escherichia coli, GI87081778, Length=816, Percent_Identity=24.2647058823529, Blast_Score=172, Evalue=1e-43,
Organism=Escherichia coli, GI1789610, Length=793, Percent_Identity=22.9508196721311, Blast_Score=121, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 93155; Mature: 93155

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTTITLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPGNYVVDVYLNN
CCCEEEEEEEEHHHHHCCCEEEEEECCCCCCEECCCCCCCCEEEEEECCCCEEEEEEECC
QLKETTELYFKSMTQTLEPCLTKEKLIKYGIAIQELHGLQFDNEQCVLLEHSPLKYTYNA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEECCCCEEEECC
ANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRANYLHSKVGGEDSYFGQIQLG
CCCEEEEECCHHHHCCHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEEEEE
FNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRG
CCCCCCEECCCHHHHCCCCHHHHHHEEEEHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCC
FSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIADL
EECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHCCHHHHHHC
GVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVLDVSIYEKNGQVQNYTVP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECC
YSTPVLSLPDGYSKYSVTIGRYREVNNDYIDPVFFEGTYIYGLPYGFTLFGGVQWANIYN
CCCCEEECCCCCCEEEEEEEHEEECCCCCCCCEEECCEEEEECCCCEEEECCEEEEHHHC
SYAIGASKDIGEYGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYY
CEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCHHCCCCEEEEEEEEEE
SKNYRTFSEAIHSSEHDEFYDKNKKSTTSMLLSQALGSLGSVNLSYNYDKYWKHEGKKSI
ECCCHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCHHHH
IASYGKNLNGVSLSLSYTKSTSKISEENEDLFSFLLSVPLQKLTNHEMYATYQNSSSSKH
HHHHCCCCCCEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
DMNHDLGITGVAFDSQLTWQARGQIEDKSKNQKATFLNASWRGTYGEIGANYSHNEINRD
CCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC
IGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTP
CCCCCCCCEEEECCCCCCCCCCCCHHHHEEECCCCCCEEEECCCCCCCCCCEEHHHHHHH
YMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLAL
HHCCEEEECCEEEECCCCCEECCEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCEEE
STVLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIASWGNKPSDTCTVFYSLPDKNKG
EEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
QISFLNGVCK
CEEECCCCCC
>Mature Secondary Structure
MKKTTITLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPGNYVVDVYLNN
CCCEEEEEEEEHHHHHCCCEEEEEECCCCCCEECCCCCCCCEEEEEECCCCEEEEEEECC
QLKETTELYFKSMTQTLEPCLTKEKLIKYGIAIQELHGLQFDNEQCVLLEHSPLKYTYNA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEECCCCEEEECC
ANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRANYLHSKVGGEDSYFGQIQLG
CCCEEEEECCHHHHCCHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEEEEE
FNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRG
CCCCCCEECCCHHHHCCCCHHHHHHEEEEHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCC
FSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIADL
EECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHCCHHHHHHC
GVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVLDVSIYEKNGQVQNYTVP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECC
YSTPVLSLPDGYSKYSVTIGRYREVNNDYIDPVFFEGTYIYGLPYGFTLFGGVQWANIYN
CCCCEEECCCCCCEEEEEEEHEEECCCCCCCCEEECCEEEEECCCCEEEECCEEEEHHHC
SYAIGASKDIGEYGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYY
CEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCHHCCCCEEEEEEEEEE
SKNYRTFSEAIHSSEHDEFYDKNKKSTTSMLLSQALGSLGSVNLSYNYDKYWKHEGKKSI
ECCCHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCHHHH
IASYGKNLNGVSLSLSYTKSTSKISEENEDLFSFLLSVPLQKLTNHEMYATYQNSSSSKH
HHHHCCCCCCEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
DMNHDLGITGVAFDSQLTWQARGQIEDKSKNQKATFLNASWRGTYGEIGANYSHNEINRD
CCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC
IGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTP
CCCCCCCCEEEECCCCCCCCCCCCHHHHEEECCCCCCEEEECCCCCCCCCCEEHHHHHHH
YMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLAL
HHCCEEEECCEEEECCCCCEECCEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCEEE
STVLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIASWGNKPSDTCTVFYSLPDKNKG
EEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
QISFLNGVCK
CEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8097515 [H]