Click here to switch to the map view.

The map label for this gene is treC [H]

Identifier: 29144733

GI number: 29144733

Start: 4634066

End: 4635718

Strand: Reverse

Name: treC [H]

Synonym: t4488

Alternate gene names: 29144733

Gene position: 4635718-4634066 (Counterclockwise)

Preceding gene: 29144734

Following gene: 29144731

Centisome position: 96.74

GC content: 55.66

Gene sequence:

>1653_bases
ATGACTATTCCCCTCTGGTGGCAAAACGGCGTTATTTATCAGATCTACCCGAAAAGTTTTCAGGACACGACCGGCAGCGG
CACCGGCGATTTACGCGGCGTCACGCAGCGCCTTGACTATCTACAGCGACTCGGCGTGGACGCCATCTGGCTCACGCCGT
TTTATATCTCGCCACAGGTGGATAACGGTTATGACGTCGCAAATTATACGGCTATCGACCCGACCTACGGCACGCTGGAT
GATTTTGACGAGCTGGTCGCGCAGGCGAAAGCACGCGGCATTCGCATCATCCTGGATATGGTGTTTAACCATACTTCTAC
CCAGCACGCCTGGTTTCGCGAAGCGCTGAACAAAGAGAGCCCATACCGTCAGTTTTACATCTGGCGCGACGGCACGCCGG
ATGTCTGCCCGAATAACTGGCAATCCAAATTTGGCGGCAGCGCCTGGCGCTGGCATAGCCAGAGCGAACAATATTATTTA
CACCTTTTCGCGCCTGAACAGGCCGACCTGAACTGGGAAAACCCCGCCGTGCGCGCCGAGCTGAAAAAGGTCTGCGAATT
CTGGGCCGATCGCGGCGTGGATGGCCTGCGTCTGGACGTGGTGAACCTGATCGCCAAAGATCAGGATTTTCCTGACGATC
CGACGGGCGACGGACGCCGCTTTTATACCGACGGACCGCGCACGCATACGTTTTTACGCGAAATGAACCGTGACGTTTTT
ACGCCGCGTAATCTGATGACGGTAGGCGAAATGTCCTCTACCACGCTGGAAAACTGCCAGCAATATGCCGCGCTTAGCGG
CGACGAACTCTCGATGACCTTCAATTTTCATCATCTGAAGGTGGATTACCCCAATGGCGAAAAGTGGACGCTGGCAAAAC
CTGATTATGTGGCGCTGAAAGCGTTGTTCCGCCAATGGCAACAGGGGATGCATAACGTCGCCTGGAACGCGTTATTCTGG
TGTAATCACGATCAGCCGCGCATCGTTTCCCGCTTTGGCGACGAGGGTGAATACCGGGTTCCAGCCGCGAAAATGCTGGC
GATGGCGCTGCACGGTATGCAAGGGACGCCTTATATCTATCAGGGCGAAGAAATCGGCATGACCAACCCACACTTTACCC
GCATCACCGATTATCGCGACGTGGAAAGCCATAACATGTTTGCCGCGCTACGCGCCGCCGGACGCGACCCCGACGAACTA
CTGGCTATCCTGGCCAGTAAATCCCGCGACAACAGCCGCACGCCGATGCAGTGGGACAACGGTAAAAACGCCGGTTTCAC
CCAGGGCGAGCCGTGGATAAGCCTGTGCGATAACTATACGGAGGTTAATGTCGCGGCGGCATTACGCGATGAAAACTCGG
TGTTTTACACCTATCAAAAGCTGATTGCGCTACGTAAAACCCAGCCTGTAATGATCTGGGGCGATTATCAGGATCTCCTC
CCGGGTAGCCCATCAGTATGGTGTTATCGTCGCCAGTGGCAGGGGCAAACCCTGCTGGTTGTCGCCAATCTGAGCGACCA
GTGTCAGGAGTGGCATCCACCGCATATCAAAGGACAGTGGCAGGCGCTACTGCATAATTATGGCGAGGTCGCCAGCCAGC
CAGCCGCGATGACGCTCCGCCCATTTGAAGCCATCTGGTGGTTACAACGCTAA

Upstream 100 bases:

>100_bases
ACCTTTATCTATCAGCGTAAGCATCGTCAGGGCACATTACAAATTGTCTAATTCTTCTTCGGGGCGCAGTTGCGTCCCAA
CGTACTTGCAGGAAACTACA

Downstream 100 bases:

>100_bases
CGCGACGTCCTTATACGGATAAACGCCACAAACCTATTGACACGGGCTGTGGCGTTGCTCCAGGTTACTGTCTGTTTTTG
TTGAATAATTAATCAGATTT

Product: trehalose-6-phosphate hydrolase

Products: NA

Alternate protein names: Alpha,alpha-phosphotrehalase [H]

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MTIPLWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQRLGVDAIWLTPFYISPQVDNGYDVANYTAIDPTYGTLD
DFDELVAQAKARGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGTPDVCPNNWQSKFGGSAWRWHSQSEQYYL
HLFAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLIAKDQDFPDDPTGDGRRFYTDGPRTHTFLREMNRDVF
TPRNLMTVGEMSSTTLENCQQYAALSGDELSMTFNFHHLKVDYPNGEKWTLAKPDYVALKALFRQWQQGMHNVAWNALFW
CNHDQPRIVSRFGDEGEYRVPAAKMLAMALHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESHNMFAALRAAGRDPDEL
LAILASKSRDNSRTPMQWDNGKNAGFTQGEPWISLCDNYTEVNVAAALRDENSVFYTYQKLIALRKTQPVMIWGDYQDLL
PGSPSVWCYRRQWQGQTLLVVANLSDQCQEWHPPHIKGQWQALLHNYGEVASQPAAMTLRPFEAIWWLQR

Sequences:

>Translated_550_residues
MTIPLWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQRLGVDAIWLTPFYISPQVDNGYDVANYTAIDPTYGTLD
DFDELVAQAKARGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGTPDVCPNNWQSKFGGSAWRWHSQSEQYYL
HLFAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLIAKDQDFPDDPTGDGRRFYTDGPRTHTFLREMNRDVF
TPRNLMTVGEMSSTTLENCQQYAALSGDELSMTFNFHHLKVDYPNGEKWTLAKPDYVALKALFRQWQQGMHNVAWNALFW
CNHDQPRIVSRFGDEGEYRVPAAKMLAMALHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESHNMFAALRAAGRDPDEL
LAILASKSRDNSRTPMQWDNGKNAGFTQGEPWISLCDNYTEVNVAAALRDENSVFYTYQKLIALRKTQPVMIWGDYQDLL
PGSPSVWCYRRQWQGQTLLVVANLSDQCQEWHPPHIKGQWQALLHNYGEVASQPAAMTLRPFEAIWWLQR
>Mature_549_residues
TIPLWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQRLGVDAIWLTPFYISPQVDNGYDVANYTAIDPTYGTLDD
FDELVAQAKARGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGTPDVCPNNWQSKFGGSAWRWHSQSEQYYLH
LFAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLIAKDQDFPDDPTGDGRRFYTDGPRTHTFLREMNRDVFT
PRNLMTVGEMSSTTLENCQQYAALSGDELSMTFNFHHLKVDYPNGEKWTLAKPDYVALKALFRQWQQGMHNVAWNALFWC
NHDQPRIVSRFGDEGEYRVPAAKMLAMALHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESHNMFAALRAAGRDPDELL
AILASKSRDNSRTPMQWDNGKNAGFTQGEPWISLCDNYTEVNVAAALRDENSVFYTYQKLIALRKTQPVMIWGDYQDLLP
GSPSVWCYRRQWQGQTLLVVANLSDQCQEWHPPHIKGQWQALLHNYGEVASQPAAMTLRPFEAIWWLQR

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI187423904, Length=560, Percent_Identity=29.2857142857143, Blast_Score=243, Evalue=3e-64,
Organism=Homo sapiens, GI65506891, Length=107, Percent_Identity=36.4485981308411, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI61744479, Length=107, Percent_Identity=36.4485981308411, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI61744475, Length=107, Percent_Identity=36.4485981308411, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI61744483, Length=107, Percent_Identity=36.4485981308411, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI61744481, Length=107, Percent_Identity=36.4485981308411, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI61744477, Length=107, Percent_Identity=36.4485981308411, Blast_Score=73, Evalue=5e-13,
Organism=Escherichia coli, GI1790687, Length=548, Percent_Identity=83.9416058394161, Blast_Score=983, Evalue=0.0,
Organism=Escherichia coli, GI1786604, Length=186, Percent_Identity=32.258064516129, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789995, Length=184, Percent_Identity=28.804347826087, Blast_Score=66, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI25147709, Length=490, Percent_Identity=25.7142857142857, Blast_Score=121, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI32565753, Length=522, Percent_Identity=22.9885057471264, Blast_Score=114, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6321726, Length=578, Percent_Identity=36.159169550173, Blast_Score=362, Evalue=1e-101,
Organism=Saccharomyces cerevisiae, GI6322245, Length=584, Percent_Identity=35.2739726027397, Blast_Score=356, Evalue=4e-99,
Organism=Saccharomyces cerevisiae, GI6324416, Length=578, Percent_Identity=36.5051903114187, Blast_Score=350, Evalue=2e-97,
Organism=Saccharomyces cerevisiae, GI6322241, Length=578, Percent_Identity=36.5051903114187, Blast_Score=350, Evalue=2e-97,
Organism=Saccharomyces cerevisiae, GI6322021, Length=578, Percent_Identity=36.5051903114187, Blast_Score=350, Evalue=2e-97,
Organism=Saccharomyces cerevisiae, GI6321731, Length=588, Percent_Identity=35.3741496598639, Blast_Score=338, Evalue=2e-93,
Organism=Saccharomyces cerevisiae, GI6319776, Length=588, Percent_Identity=35.2040816326531, Blast_Score=337, Evalue=3e-93,
Organism=Drosophila melanogaster, GI24583745, Length=536, Percent_Identity=35.8208955223881, Blast_Score=300, Evalue=2e-81,
Organism=Drosophila melanogaster, GI24583749, Length=551, Percent_Identity=35.02722323049, Blast_Score=295, Evalue=4e-80,
Organism=Drosophila melanogaster, GI24583747, Length=551, Percent_Identity=35.02722323049, Blast_Score=295, Evalue=4e-80,
Organism=Drosophila melanogaster, GI221330053, Length=536, Percent_Identity=35.4477611940299, Blast_Score=289, Evalue=4e-78,
Organism=Drosophila melanogaster, GI45549022, Length=534, Percent_Identity=35.2059925093633, Blast_Score=279, Evalue=4e-75,
Organism=Drosophila melanogaster, GI24586599, Length=582, Percent_Identity=32.3024054982818, Blast_Score=271, Evalue=6e-73,
Organism=Drosophila melanogaster, GI24586597, Length=537, Percent_Identity=33.7057728119181, Blast_Score=269, Evalue=3e-72,
Organism=Drosophila melanogaster, GI24586587, Length=496, Percent_Identity=34.0725806451613, Blast_Score=266, Evalue=2e-71,
Organism=Drosophila melanogaster, GI24586589, Length=535, Percent_Identity=34.2056074766355, Blast_Score=261, Evalue=7e-70,
Organism=Drosophila melanogaster, GI24586593, Length=531, Percent_Identity=32.7683615819209, Blast_Score=256, Evalue=3e-68,
Organism=Drosophila melanogaster, GI24586591, Length=579, Percent_Identity=31.2607944732297, Blast_Score=255, Evalue=5e-68,
Organism=Drosophila melanogaster, GI281360393, Length=476, Percent_Identity=30.672268907563, Blast_Score=187, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR012769 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.93 [H]

Molecular weight: Translated: 63548; Mature: 63417

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPLWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQRLGVDAIWLTPFYISPQV
CEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
DNGYDVANYTAIDPTYGTLDDFDELVAQAKARGIRIILDMVFNHTSTQHAWFREALNKES
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCHHHHHHHHHCCCC
PYRQFYIWRDGTPDVCPNNWQSKFGGSAWRWHSQSEQYYLHLFAPEQADLNWENPAVRAE
CCEEEEEEECCCCCCCCCCCHHHCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHH
LKKVCEFWADRGVDGLRLDVVNLIAKDQDFPDDPTGDGRRFYTDGPRTHTFLREMNRDVF
HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCC
TPRNLMTVGEMSSTTLENCQQYAALSGDELSMTFNFHHLKVDYPNGEKWTLAKPDYVALK
CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCEEEECCCCHHHHH
ALFRQWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMALHGMQGTPYIY
HHHHHHHHHHHHHHCEEEEEECCCCCHHHHHCCCCCCEECCHHHHHHHHHHCCCCCCEEE
QGEEIGMTNPHFTRITDYRDVESHNMFAALRAAGRDPDELLAILASKSRDNSRTPMQWDN
ECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC
GKNAGFTQGEPWISLCDNYTEVNVAAALRDENSVFYTYQKLIALRKTQPVMIWGDYQDLL
CCCCCCCCCCCHHHHCCCCCEEEEEEEEECCCCEEHHHHHHHHHHCCCCEEEECCHHHHC
PGSPSVWCYRRQWQGQTLLVVANLSDQCQEWHPPHIKGQWQALLHNYGEVASQPAAMTLR
CCCCCEEEEEEECCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
PFEAIWWLQR
HHHHHHEECC
>Mature Secondary Structure 
TIPLWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQRLGVDAIWLTPFYISPQV
EEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
DNGYDVANYTAIDPTYGTLDDFDELVAQAKARGIRIILDMVFNHTSTQHAWFREALNKES
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCHHHHHHHHHCCCC
PYRQFYIWRDGTPDVCPNNWQSKFGGSAWRWHSQSEQYYLHLFAPEQADLNWENPAVRAE
CCEEEEEEECCCCCCCCCCCHHHCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHH
LKKVCEFWADRGVDGLRLDVVNLIAKDQDFPDDPTGDGRRFYTDGPRTHTFLREMNRDVF
HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCC
TPRNLMTVGEMSSTTLENCQQYAALSGDELSMTFNFHHLKVDYPNGEKWTLAKPDYVALK
CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCEEEECCCCHHHHH
ALFRQWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMALHGMQGTPYIY
HHHHHHHHHHHHHHCEEEEEECCCCCHHHHHCCCCCCEECCHHHHHHHHHHCCCCCCEEE
QGEEIGMTNPHFTRITDYRDVESHNMFAALRAAGRDPDELLAILASKSRDNSRTPMQWDN
ECCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC
GKNAGFTQGEPWISLCDNYTEVNVAAALRDENSVFYTYQKLIALRKTQPVMIWGDYQDLL
CCCCCCCCCCCHHHHCCCCCEEEEEEEEECCCCEEHHHHHHHHHHCCCCEEEECCHHHHC
PGSPSVWCYRRQWQGQTLLVVANLSDQCQEWHPPHIKGQWQALLHNYGEVASQPAAMTLR
CCCCCEEEEEEECCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
PFEAIWWLQR
HHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8083158; 7610040; 9278503; 8421692 [H]