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The map label for this gene is sgaU [H]

Identifier: 29144683

GI number: 29144683

Start: 4586544

End: 4587398

Strand: Direct

Name: sgaU [H]

Synonym: t4438

Alternate gene names: 29144683

Gene position: 4586544-4587398 (Clockwise)

Preceding gene: 29144682

Following gene: 29144684

Centisome position: 95.71

GC content: 57.31

Gene sequence:

>855_bases
ATGCTGTCGAAACAAATTCCGCTCGGCATCTATGAAAAAGCGCTCCCTGCCGGGGAGTGCTGGCTGGAACGCCTGCGGCT
GGCGAAAACGCTGGGTTTTGACTTCGTTGAAATGTCGGTGGACGAGACCGACGCCCGACTGGCGCGGCTCGACTGGAGTC
GCGAGCAGCGCCTGGCGCTGGTGAGCGCGGTTGCTGAAACCGGCGTGCGTGTGCCGTCCATGTGTCTGAGCGCGCATCGT
CGTTTTCCGCTCGGTAGCGAAGATGACGCGGTACGGGCGCAGGGGCTGGAGATTATGCGTAAAGCGATTCAGTTTGCGCA
GGACGTCGGGATTCGCGTCATTCAACTGGCGGGGTACGACGTTTACTATCAGCAGGCCAACGACGAAACGCGTTGCCGCT
TCCGCGATGGGTTAAAAGAGAGCGTTGATATGGCCAGCCGCGCCCAGGTGACGCTGGCGATGGAGATCATGGATTACCCA
TTGATGAATTCCATCAGTAAAGCGCTAGGCTATGCTCACTACCTCAATAACCCGTGCTTTCAGCTCTATCCGGATATCGG
CAATCTGTCTGCCTGGGATAACGACGTACAGATGGAGCTACAGGCGGGAATCGGGCATATCGTCGCGGTACACGTCAAAG
ATACTAAACCCGGCGTGTTCAAAAATGTGCCGTTTGGCGAAGGCGTTGTCGATTTCGAACGCTGCTTCGAAACGCTCAAA
CAGAGTGGCTATTGCGGGCCCTATCTGATTGAGATGTGGAGCGAAACAGCAGAGAACCCGGCGGCAGAGGTAGCGAAAGC
GCGTGACTGGGTGAAAGCGCGCATGGCCAAAGCAGGCATGGTGGAGGCGGCATAA

Upstream 100 bases:

>100_bases
CTTTATTGCTGGCCGCAGCATTCGCGATGCTGAATCGCCGGTAGAAGCCGCACGGCAGTTCAAACGCTCCATTGCCCAAC
TGTGGGGCTAAGGAGCGGCT

Downstream 100 bases:

>100_bases
TGCAAAAGCTCAAGCAGCAGGTATTTGACGCTAACATGGATTTGCCCCGTTATGGACTGGTGACGTTTACCTGGGGCAAC
GTCAGCGCTATCGATCGCGA

Product: L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: L-ascorbate utilization protein E; L-xylulose-5-phosphate 3-epimerase [H]

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETDARLARLDWSREQRLALVSAVAETGVRVPSMCLSAHR
RFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQQANDETRCRFRDGLKESVDMASRAQVTLAMEIMDYP
LMNSISKALGYAHYLNNPCFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLK
QSGYCGPYLIEMWSETAENPAAEVAKARDWVKARMAKAGMVEAA

Sequences:

>Translated_284_residues
MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETDARLARLDWSREQRLALVSAVAETGVRVPSMCLSAHR
RFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQQANDETRCRFRDGLKESVDMASRAQVTLAMEIMDYP
LMNSISKALGYAHYLNNPCFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLK
QSGYCGPYLIEMWSETAENPAAEVAKARDWVKARMAKAGMVEAA
>Mature_284_residues
MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETDARLARLDWSREQRLALVSAVAETGVRVPSMCLSAHR
RFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQQANDETRCRFRDGLKESVDMASRAQVTLAMEIMDYP
LMNSISKALGYAHYLNNPCFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLK
QSGYCGPYLIEMWSETAENPAAEVAKARDWVKARMAKAGMVEAA

Specific function: Catalyzes the isomerization of L-xylulose-5-phosphate to L-ribulose-5-phosphate. Is involved in the anaerobic L-ascorbate utilization [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI1790641, Length=284, Percent_Identity=95.0704225352113, Blast_Score=563, Evalue=1e-162,
Organism=Escherichia coli, GI87082294, Length=280, Percent_Identity=58.5714285714286, Blast_Score=332, Evalue=2e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.1.3.22 [H]

Molecular weight: Translated: 31783; Mature: 31783

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETDARLARLDWSREQRLAL
CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCHHEEECCCHHHHHHHHHCCCHHHHHHH
VSAVAETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYD
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCE
VYYQQANDETRCRFRDGLKESVDMASRAQVTLAMEIMDYPLMNSISKALGYAHYLNNPCF
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCE
QLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLK
EECCCCCCCCCCCCCHHEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
QSGYCGPYLIEMWSETAENPAAEVAKARDWVKARMAKAGMVEAA
HCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETDARLARLDWSREQRLAL
CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCHHEEECCCHHHHHHHHHCCCHHHHHHH
VSAVAETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYD
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCE
VYYQQANDETRCRFRDGLKESVDMASRAQVTLAMEIMDYPLMNSISKALGYAHYLNNPCF
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCE
QLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLK
EECCCCCCCCCCCCCHHEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
QSGYCGPYLIEMWSETAENPAAEVAKARDWVKARMAKAGMVEAA
HCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA