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The map label for this gene is glcR [H]

Identifier: 29144384

GI number: 29144384

Start: 4263724

End: 4264482

Strand: Reverse

Name: glcR [H]

Synonym: t4122

Alternate gene names: 29144384

Gene position: 4264482-4263724 (Counterclockwise)

Preceding gene: 29144385

Following gene: 29144383

Centisome position: 88.99

GC content: 45.06

Gene sequence:

>759_bases
ATGAATCCAATTAAAAGACGAAAACATATTCTTGATGAATTAAACAAATTCGGTGAAGTCACCGTTATTAAATTATCGGA
AATGCTCAACGTCACCTCGGAAACCATTCGTCGCGATCTCTCCTTACTGGAATCAGAAGGCAAAATCACTAAGATTCATG
GGGGCGCGGTCAAAAAGCAAGTTGTCCAGGAAGATGCGTTTAGCGCAAGAATAGAGGCGCATCGCGAAGAGAAAATAGCG
ATTGGCAAACTTGCCGCCGAAATGATCAGTGAACGGGATACATTGTTTATTGATTCCTGTACAACTAACCTTATTCTGGC
CGAGCAATTACCGCCTCTCGCTTTTTCCGTGATTACCAATTCAGCACTGATTGCCGATAAAATTAAAGAGCATAACCTGC
AGGCCCGCGTGTATGTATTAGGCGGCGAATATGATTACCATTTTCGCGCTAATCTCGGCGTCTCGGTATGTCAGCAGATT
AACGCGATTCACGCGGATATCTGTTTTATTGGCGCTGGCGGCATTTCTCCCCAGCATGGCGTGTTGGTGAAGAGCTTTGA
AGAAGCCTACGTTGCCAAAGCCATGATTGCGATGAGCAAAAAATCAGTGATTCTCGCTGACCATACCAAATTTGGTCAGG
ACGGTGTGATGTGCATCGCAAGCGTAAAAGAAATCGATAACATCATCACGGATAAAGGATTTACGTCAACGGGTTATACG
CCACAGGATTTCGCTGGAAAGCTGCGGATTGCTGACTGA

Upstream 100 bases:

>100_bases
GCCACGAATGATGAGGAGGGTATCGTCCATGCGTTGGAGTGGTTGCGTTGCCTTACGCATCCAGTTACCATGCGCCAAAG
GTTGACAGCGGCGAAAGATA

Downstream 100 bases:

>100_bases
GCGCTATCCGCCCGTTGCGTATTGCCGTAGACTAAATGCATCGGCTAACTGAGGGCACCCGTATGGCACTCCCCCGCATT
ACCCAAAAAGAGATGACCGA

Product: deoR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MNPIKRRKHILDELNKFGEVTVIKLSEMLNVTSETIRRDLSLLESEGKITKIHGGAVKKQVVQEDAFSARIEAHREEKIA
IGKLAAEMISERDTLFIDSCTTNLILAEQLPPLAFSVITNSALIADKIKEHNLQARVYVLGGEYDYHFRANLGVSVCQQI
NAIHADICFIGAGGISPQHGVLVKSFEEAYVAKAMIAMSKKSVILADHTKFGQDGVMCIASVKEIDNIITDKGFTSTGYT
PQDFAGKLRIAD

Sequences:

>Translated_252_residues
MNPIKRRKHILDELNKFGEVTVIKLSEMLNVTSETIRRDLSLLESEGKITKIHGGAVKKQVVQEDAFSARIEAHREEKIA
IGKLAAEMISERDTLFIDSCTTNLILAEQLPPLAFSVITNSALIADKIKEHNLQARVYVLGGEYDYHFRANLGVSVCQQI
NAIHADICFIGAGGISPQHGVLVKSFEEAYVAKAMIAMSKKSVILADHTKFGQDGVMCIASVKEIDNIITDKGFTSTGYT
PQDFAGKLRIAD
>Mature_252_residues
MNPIKRRKHILDELNKFGEVTVIKLSEMLNVTSETIRRDLSLLESEGKITKIHGGAVKKQVVQEDAFSARIEAHREEKIA
IGKLAAEMISERDTLFIDSCTTNLILAEQLPPLAFSVITNSALIADKIKEHNLQARVYVLGGEYDYHFRANLGVSVCQQI
NAIHADICFIGAGGISPQHGVLVKSFEEAYVAKAMIAMSKKSVILADHTKFGQDGVMCIASVKEIDNIITDKGFTSTGYT
PQDFAGKLRIAD

Specific function: Plays a role in carbon catabolite repression (CCR). Specifically required for transcriptional repression of the levanase operon by glucose but not by other sugars [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=250, Percent_Identity=29.6, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082344, Length=232, Percent_Identity=31.0344827586207, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789059, Length=241, Percent_Identity=29.045643153527, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1788069, Length=218, Percent_Identity=32.1100917431193, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789170, Length=238, Percent_Identity=28.1512605042017, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1789829, Length=234, Percent_Identity=28.2051282051282, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787540, Length=228, Percent_Identity=28.0701754385965, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790635, Length=236, Percent_Identity=25, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1789519, Length=256, Percent_Identity=26.5625, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787063, Length=232, Percent_Identity=25.8620689655172, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790753, Length=236, Percent_Identity=25.8474576271186, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27716; Mature: 27716

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPIKRRKHILDELNKFGEVTVIKLSEMLNVTSETIRRDLSLLESEGKITKIHGGAVKKQ
CCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
VVQEDAFSARIEAHREEKIAIGKLAAEMISERDTLFIDSCTTNLILAEQLPPLAFSVITN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCHHHHHHHC
SALIADKIKEHNLQARVYVLGGEYDYHFRANLGVSVCQQINAIHADICFIGAGGISPQHG
CHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHEEEEEEEECCCCCCCCC
VLVKSFEEAYVAKAMIAMSKKSVILADHTKFGQDGVMCIASVKEIDNIITDKGFTSTGYT
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PQDFAGKLRIAD
CHHHCCCEEECC
>Mature Secondary Structure
MNPIKRRKHILDELNKFGEVTVIKLSEMLNVTSETIRRDLSLLESEGKITKIHGGAVKKQ
CCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
VVQEDAFSARIEAHREEKIAIGKLAAEMISERDTLFIDSCTTNLILAEQLPPLAFSVITN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCHHHHHHHC
SALIADKIKEHNLQARVYVLGGEYDYHFRANLGVSVCQQINAIHADICFIGAGGISPQHG
CHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHEEEEEEEECCCCCCCCC
VLVKSFEEAYVAKAMIAMSKKSVILADHTKFGQDGVMCIASVKEIDNIITDKGFTSTGYT
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
PQDFAGKLRIAD
CHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]