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The map label for this gene is hopD [H]

Identifier: 29144328

GI number: 29144328

Start: 4216773

End: 4217240

Strand: Reverse

Name: hopD [H]

Synonym: t4063

Alternate gene names: 29144328

Gene position: 4217240-4216773 (Counterclockwise)

Preceding gene: 29144359

Following gene: 29144316

Centisome position: 88.01

GC content: 52.35

Gene sequence:

>468_bases
ATGTTTGTTGCCCTCCCCTTTCTCATTTTTTATGCGTCGTTCTCTTTATTACTTGGCATATACGACGCGCGTACCGGTCT
GCTACCTGACCGGTTTACCTGTCCATTACTGTGGGGTGGTCTGCTTTATCACCAGATTTGCCTGCCGGAGCGTTTACCGG
ATGCGCTTTGGGGCGCTATCGCCGGCTATGGCGGATTCGCGTTAATTTACTGGGGCTATCGCCTGCGTTATCAGAAAGAG
GGGCTTGGATATGGCGACGTCAAGTACCTTGCTGCCTTAGGGGCGTGGCATTGTTGGGAAACACTGCCGTTACTGGTTTT
CCTTGCCGCTATGTTGGCCTGTGGCAGGTTTGGCGTCGCGCTACTGGTGAGAGGTAAATCGGCATTAATAAACCCGCTAC
CTTTTGGGCCATGGCTGGCGGTGGCGGGTTTCATAACAGGTTGGAAAGTTTTCTTTCCAGACGGTTAA

Upstream 100 bases:

>100_bases
ATCTTTTCTTTGGAAGGCATCAGGCAAACCTGGCAATACGTCGTTGTCGCTGTCGCATAAATCTATAAAGGTGAGCACAA
ACCTTGACGAGGATTTGCTT

Downstream 100 bases:

>100_bases
TCGGTAACCTTAATTTGTGATTGCAGATAATTTTGCATACCAAGTTTGGCAATCAAATCCAGCTCAGTTTCCAGCCAGTC
GATGTGGCCTTCCTCGTCGG

Product: Type III leader peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFALIYWGYRLRYQKE
GLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGRFGVALLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG

Sequences:

>Translated_155_residues
MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFALIYWGYRLRYQKE
GLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGRFGVALLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG
>Mature_155_residues
MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAIAGYGGFALIYWGYRLRYQKE
GLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGRFGVALLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG

Specific function: Cleaves Type-4 Fimbrial Leader Sequence And Methylates The N-Terminal (Generally Phe) Residue (By Similarity). [C]

COG id: COG1989

COG function: function code NOU; Type II secretory pathway, prepilin signal peptidase PulO and related peptidases

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A24 family [H]

Homologues:

Organism=Escherichia coli, GI1789732, Length=139, Percent_Identity=45.3237410071942, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014032
- InterPro:   IPR000045 [H]

Pfam domain/function: PF01478 Peptidase_A24 [H]

EC number: 3.4.23.43

Molecular weight: Translated: 17199; Mature: 17199

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGRFGVA
HCCCCCEEEEHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
LLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG
EEEECCHHHCCCCCCCHHHHHHHHHHCCEEEECCC
>Mature Secondary Structure
MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGRFGVA
HCCCCCEEEEHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
LLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG
EEEECCHHHCCCCCCCHHHHHHHHHHCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]