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The map label for this gene is yhgF [H]

Identifier: 29144270

GI number: 29144270

Start: 4151785

End: 4154115

Strand: Reverse

Name: yhgF [H]

Synonym: t4002

Alternate gene names: 29144270

Gene position: 4154115-4151785 (Counterclockwise)

Preceding gene: 29144271

Following gene: 29144269

Centisome position: 86.69

GC content: 58.43

Gene sequence:

>2331_bases
ATGATGAATGATTCTTTCTGCCGCATTATTGCGGGTGAAATCCAGGCAAATGCCGGGCAGGTTGAAGCTGCCGTTCGCCT
GCTTGACGAAGGGAACACCGTGCCGTTTATCGCACGTTATCGTAAAGAAATCACCGGCGGTCTGGATGACACGCAGTTGC
GTAACCTGGAAACGCGTCTGGGCTATCTGCGTGAGCTGGAAGACAGGCGTCAGGCCATCCTCAAGTCCATTTCCGAACAA
GGCAAACTGACCGATGAGCTGGCTGGCGCCATCAACGCTACGTTAAGTAAGACCGAGCTCGAAGACCTCTACCTGCCCTA
TAAACCTAAACGCCGCACCCGTGGACAAATCGCCATTGAAGCCGGCCTTGAGCCGCTGGCCGATCTGCTCTGGAACGAAC
CGTCCCACGATCCTGACGTGAAAGCGGCAAAGTACATTGATGGCGACAAAGGCGTGGCGGACACGAAAGCCGCGCTCGAC
GGCGCACGCTACATTCTGATGGAGCGCTTTGCCGAAGACGCCGCATTGCTGGCGAAAGTGCGTGATTACCTGTGGAAGAA
TGCCCATCTGGTCGCCACAGTCGTGAGCGGCAAAGAGGAAGAAGGGGCAAAATTCCGCGACTATTTCGACCATCATGAGC
CCATTGCTAACGTCCCGTCTCACCGTGCGCTGGCCATGTTCCGTGGTCGTAACGAAGGCATTCTGCAACTTTCGCTCAAT
GCCGACCCACAGTTTGATGAGCCGCCGAAAGAGAGCTACTGCGAGCAAATCATCATGGACCATCTCGGCCTGCGGCTAAA
TAACGCCCCGGCGGATAGCTGGCGCAAAGGCGTAGTGAGCTGGACGTGGCGTATCAAAGTCTTAATGCACCTCGAAACCG
AACTGATGGGCACCGTGCGCGAACGTGCGGAAGACGAAGCGATTAACGTGTTTGCGCGTAACCTGCACGACCTGCTGATG
GCAGCCCCCGCAGGCCTGCGCGCCACGATGGGCCTTGATCCTGGCCTGCGTACCGGCGTAAAAGTCGCTGTCGTTGACGG
CACCGGCAAGCTGGTGGCGACGGATACCATTTATCCGCATACCGGTCAGGCGGCCAAAGCGGCTACCGTGATCGCCGCGC
TGTGCGAAAAATACCACGTCGAACTGGTCGCGATTGGCAACGGTACGGCTTCGCGTGAAACCGAACGTTTCTATCTCGAC
GTACAGAAACAGTTCCCGAACGTGACGGCGCAGAAAGTGATCGTCAGCGAAGCGGGGGCGTCCGTGTATTCCGCTTCTGA
GCTGGCGGCGCAGGAGTTTCCGGATCTCGACGTCTCCCTGCGCGGCGCGGTCTCTATCGCGCGTCGTCTGCAGGATCCGC
TGGCGGAACTGGTGAAAATCGATCCGAAATCGATCGGCGTCGGCCAATATCAACACGATGTCAGCCAGACCCAATTGGCC
CGTAAACTGGATGCGGTGGTCGAAGACTGCGTAAACGCCGTCGGCGTCGATTTGAATACCGCCTCCGTACCGCTGCTGAC
CCGCGTCGCAGGCTTAACGCGCATGATGGCGCAAAACATCGTCGCCTGGCGCGATGAGAACGGTCAGTTCCAGAACCGCC
AGCAACTGTTGAGGGTGAGCCGTCTGGGGCCGAAAGCGTTTGAGCAGTGCGCGGGCTTCCTGCGTATTAACCACGGCGAT
AACCCGCTGGATGCCTCCACCGTCCACCCGGAAGCCTATCCGGTTGTCGAACGCATTCTGGCGGCGACGCAGCAAGCGCT
AAAAGATCTGATGGGCAACAGCAACGAATTGCGTCACCTCAAGGCCGCTGATTTTACCGACGATAAATTCGGCGTGCCGA
CCGTGAGCGATATCATCAAAGAGCTGGAAAAACCGGGCCGCGACCCGCGTCCTGAATTTAAAACCGCGCAATTCGCCGAT
GGCGTCGAAACCATGAACGACCTGCTGCCGGGGATGATTCTGGAAGGGGCAGTCACTAACGTCACTAACTTCGGCGCGTT
TGTCGATATCGGCGTTCATCAGGATGGCCTGGTCCACATCTCTTCCCTGTCGACTAAGTTCGTCGACGATCCACACACCG
TGGTAAAAGCTGGCGACATCGTGAAGGTGAAAGTGCTGGAAGTGGATCTGCAACGTAAGCGTATTGCGCTGACGATGCGT
CTGGACGAACAGCCCGGCGAAACCGCCGCTCGCCGCGGCGGCGGTGCCGATCGCGCTCAGGGCAACCGCCCGGCGTCAAA
AGCGGCGAAACCGCGCGGTCGTGACGCCCAGCCAGCCGGTAACAGCGCCATGATGGACGCGCTGGCAGCGGCAATGGGAA
AAAAACGCTAA

Upstream 100 bases:

>100_bases
AAGACAAGAAGAATCCTAAGCCCCCGCTGATGGCTGGCATTTTTGCCAGCCAATCCGTATAACTATCCCCTGATTTTTAT
CCTGAAGACGAAGCTAACCC

Downstream 100 bases:

>100_bases
TCGGGTAATACGCAGGCCGGGTTACTTCTTATCCGGCCTGCGATTTTGCAATACGTCCAACCCTTTCTTTTTTAATTAAC
AATTAAATCTTACCCATTAG

Product: transcription accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 776; Mature: 776

Protein sequence:

>776_residues
MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLGYLRELEDRRQAILKSISEQ
GKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWNEPSHDPDVKAAKYIDGDKGVADTKAALD
GARYILMERFAEDAALLAKVRDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLN
ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLM
AAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHTGQAAKAATVIAALCEKYHVELVAIGNGTASRETERFYLD
VQKQFPNVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA
RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLRVSRLGPKAFEQCAGFLRINHGD
NPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHLKAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFAD
GVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
LDEQPGETAARRGGGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR

Sequences:

>Translated_776_residues
MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLGYLRELEDRRQAILKSISEQ
GKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWNEPSHDPDVKAAKYIDGDKGVADTKAALD
GARYILMERFAEDAALLAKVRDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLN
ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLM
AAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHTGQAAKAATVIAALCEKYHVELVAIGNGTASRETERFYLD
VQKQFPNVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA
RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLRVSRLGPKAFEQCAGFLRINHGD
NPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHLKAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFAD
GVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
LDEQPGETAARRGGGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR
>Mature_776_residues
MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLGYLRELEDRRQAILKSISEQ
GKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWNEPSHDPDVKAAKYIDGDKGVADTKAALD
GARYILMERFAEDAALLAKVRDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLN
ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLM
AAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHTGQAAKAATVIAALCEKYHVELVAIGNGTASRETERFYLD
VQKQFPNVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA
RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLRVSRLGPKAFEQCAGFLRINHGD
NPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHLKAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFAD
GVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
LDEQPGETAARRGGGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=776, Percent_Identity=34.6649484536082, Blast_Score=401, Evalue=1e-111,
Organism=Homo sapiens, GI27597090, Length=705, Percent_Identity=22.8368794326241, Blast_Score=96, Evalue=2e-19,
Organism=Escherichia coli, GI87082262, Length=776, Percent_Identity=93.9432989690722, Blast_Score=1462, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=89, Percent_Identity=41.5730337078652, Blast_Score=69, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=720, Percent_Identity=27.3611111111111, Blast_Score=219, Evalue=5e-57,
Organism=Caenorhabditis elegans, GI17552892, Length=294, Percent_Identity=28.2312925170068, Blast_Score=86, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6321552, Length=229, Percent_Identity=26.6375545851528, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI62484314, Length=770, Percent_Identity=31.1688311688312, Blast_Score=348, Evalue=8e-96,
Organism=Drosophila melanogaster, GI24640080, Length=448, Percent_Identity=23.4375, Blast_Score=93, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 85023; Mature: 85023

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
GYLRELEDRRQAILKSISEQGKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
AGLEPLADLLWNEPSHDPDVKAAKYIDGDKGVADTKAALDGARYILMERFAEDAALLAKV
CCCHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLN
HHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEEEC
ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVR
CCCCCCCCCHHHHHHHHHHHHHCCEECCCCCHHHHCCCEEEEEEEEEHHHHHHHHHHHHH
ERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPH
HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCEEEECCCCCC
TGQAAKAATVIAALCEKYHVELVAIGNGTASRETERFYLDVQKQFPNVTAQKVIVSEAGA
CCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHEEEHHHHCCCCHHHHHHHHHCCC
SVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLRVS
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHH
RLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHL
HCCHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCEE
KAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTN
ECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
VTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
HHHCCCEEEECCCCCCCEEEECCCHHCCCCCHHHEECCCEEEEEEEEEECCCCEEEEEEE
LDEQPGETAARRGGGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR
ECCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
GYLRELEDRRQAILKSISEQGKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
AGLEPLADLLWNEPSHDPDVKAAKYIDGDKGVADTKAALDGARYILMERFAEDAALLAKV
CCCHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLN
HHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEEEC
ADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVR
CCCCCCCCCHHHHHHHHHHHHHCCEECCCCCHHHHCCCEEEEEEEEEHHHHHHHHHHHHH
ERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPH
HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCEEEECCCCCC
TGQAAKAATVIAALCEKYHVELVAIGNGTASRETERFYLDVQKQFPNVTAQKVIVSEAGA
CCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCHHHEEEHHHHCCCCHHHHHHHHHCCC
SVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLRVS
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHH
RLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHL
HCCHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCEE
KAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTN
ECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
VTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
HHHCCCEEEECCCCCCCEEEECCCHHCCCCCHHHEECCCEEEEEEEEEECCCCEEEEEEE
LDEQPGETAARRGGGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR
ECCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]