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The map label for this gene is yvoA [H]

Identifier: 29144187

GI number: 29144187

Start: 4052815

End: 4053534

Strand: Direct

Name: yvoA [H]

Synonym: t3915

Alternate gene names: 29144187

Gene position: 4052815-4053534 (Clockwise)

Preceding gene: 29144185

Following gene: 29144188

Centisome position: 84.58

GC content: 48.75

Gene sequence:

>720_bases
ATGATCGAGCAACCCGACAGTAAAAGCGCCAAACCGCTTTATAAGCAGCTTGAAGACGCCTTAAAAGAGGCTATTGCGCG
TGGAGAGTATAAACCAGGCCAGCAGATCCCGACGGAAAATGAACTGAGCGTGCGCTGGCAGGTGAGCAGGGTCACGGTCC
GTAAGGCGCTGGATGCGCTGACGCGTGAAAATTTGCTGACCCGTGTCTCCGGCAAAGGCACCTTTGTTTCTGGTGAGAAA
TTTCAGCGTAGCATGACCGGCATCATGAGTTTCAGCGAGTTATGCCAGTCCCAGGGACGTCGCCCGGGGTCACGCACCAT
CAAATCCGTTTTTGAATCGGTAGACGATGAGACAAAAGCGTTACTGAATATGAACGATGGCGAAAAAGCGGTCGTCATTG
AACGTATCCGCTATGCCGACGATGTGGCGGTATCGCTGGAAACCGTACATCTTCCCCCACGTTTTGCGTTTTTGCTGGAC
GAAGATCTTAATAATCACTCTTTGTATGAATGCTTACGCGAGAAATACCATTTATGGTTTACCCACTCCCGTAAGATGAT
CGAACTGGTTTATGCCAGCTTTGAAGTCGCCCATTATCTTGGCGTTAACGAGGGTTATCCGCTGATCCTGATAAAAAGTG
AAATGATTGATAACAAAGGAGAACTCTCCTGCGTTTCGCAACAGTTGATTGTCGGCGATAAAATACGGTTTACCGTATGA

Upstream 100 bases:

>100_bases
TGGTATCACTACGTCACCACATGGCGTGGATTCACAAACAAAGGTAACGTAAATAGTTATAATACAAGCTATGGCACCAT
GATAATACAAATGGATACAA

Downstream 100 bases:

>100_bases
TGTCAGCATTACGCTAACGAAGAGCAGGCTGAATCGGGATCCAGATCGCGGATCCCGATTTTTTTTGGTTTCCATCTTGA
TCAAATGTCTTTAAATATCA

Product: gntR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MIEQPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRENLLTRVSGKGTFVSGEK
FQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALLNMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLD
EDLNNHSLYECLREKYHLWFTHSRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV

Sequences:

>Translated_239_residues
MIEQPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRENLLTRVSGKGTFVSGEK
FQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALLNMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLD
EDLNNHSLYECLREKYHLWFTHSRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV
>Mature_239_residues
MIEQPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRENLLTRVSGKGTFVSGEK
FQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALLNMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLD
EDLNNHSLYECLREKYHLWFTHSRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=235, Percent_Identity=28.0851063829787, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1786950, Length=201, Percent_Identity=29.3532338308458, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788418, Length=208, Percent_Identity=28.3653846153846, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790540, Length=227, Percent_Identity=23.7885462555066, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790304, Length=210, Percent_Identity=27.6190476190476, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27249; Mature: 27249

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDAL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHH
TRENLLTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKA
HHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHH
LLNMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWF
HCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHEEE
THSRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV
ECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCHHHHHHHHHCCCEEEEEC
>Mature Secondary Structure
MIEQPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDAL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHH
TRENLLTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKA
HHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHH
LLNMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWF
HCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHEEE
THSRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV
ECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCHHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]