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The map label for this gene is pagC [H]

Identifier: 29143293

GI number: 29143293

Start: 3035952

End: 3036488

Strand: Reverse

Name: pagC [H]

Synonym: t2942

Alternate gene names: 29143293

Gene position: 3036488-3035952 (Counterclockwise)

Preceding gene: 29143294

Following gene: 161486787

Centisome position: 63.37

GC content: 48.6

Gene sequence:

>537_bases
ATGAACAAAATGCTATTAGCCGGAAGTGCCGGTATTGTTCTGCTGTCTGCTGCAGCCAGTCCGGTATGGGCAGACGATAA
TGCCAGTACATTTTCACTTGGATACGCCCAGTCCCATACTAATCACGCCGGGACGTTGCGTGGGGTTCGGCTGGCAAACA
ACTATGAAATGTCACCGGACTGGGGGCTGACAACCTCATTTGCCTGGCTAAATGGAAGCCAGCGCTATTCCGATGAAAGC
AGTAATGGTCGTGTAACAACCCGTTATTACTCCCTGCTTGCAGGCCCCTCATGGAAAATAAATAACCAGTTAAGTCTGTA
TAGTCAAGTGGGCCCCGTATTATTGCATCAGCGTGATCACGGGATAAATGAGTCTGATAGTAAGGTCGGATATGGTTATT
CTGCTGGCGTGGCTTATACCCCGGTCAGTAATGTCGCTATAACTCTGGGTTATGAGGGAGCGGATTTTGATGCTACCCAT
AACAGCGGAAGCCTTAATAGCAATGGTTTTAATCTTGGCGTGGGTTACCGGTTCTGA

Upstream 100 bases:

>100_bases
TCATAATTTAAAAGATTTATTTATAGTTTGTTATCACGGAAAGATTTTAACTTAATACATGCCAGTAAGGCATCAGGTAA
AAATAACCGGAGAGAAGAAG

Downstream 100 bases:

>100_bases
ATAGGATAATCCGATAAAAAATGTTACTTTGTGGAGATGATGGATTATGAAAAGCCATATTATGCCAGGCGTTGCGCTGA
TGGTTATCCTGTTTTCAGGA

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNKMLLAGSAGIVLLSAAASPVWADDNASTFSLGYAQSHTNHAGTLRGVRLANNYEMSPDWGLTTSFAWLNGSQRYSDES
SNGRVTTRYYSLLAGPSWKINNQLSLYSQVGPVLLHQRDHGINESDSKVGYGYSAGVAYTPVSNVAITLGYEGADFDATH
NSGSLNSNGFNLGVGYRF

Sequences:

>Translated_178_residues
MNKMLLAGSAGIVLLSAAASPVWADDNASTFSLGYAQSHTNHAGTLRGVRLANNYEMSPDWGLTTSFAWLNGSQRYSDES
SNGRVTTRYYSLLAGPSWKINNQLSLYSQVGPVLLHQRDHGINESDSKVGYGYSAGVAYTPVSNVAITLGYEGADFDATH
NSGSLNSNGFNLGVGYRF
>Mature_178_residues
MNKMLLAGSAGIVLLSAAASPVWADDNASTFSLGYAQSHTNHAGTLRGVRLANNYEMSPDWGLTTSFAWLNGSQRYSDES
SNGRVTTRYYSLLAGPSWKINNQLSLYSQVGPVLLHQRDHGINESDSKVGYGYSAGVAYTPVSNVAITLGYEGADFDATH
NSGSLNSNGFNLGVGYRF

Specific function: Essential for full virulence and survival within macrophages [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 19069; Mature: 19069

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKMLLAGSAGIVLLSAAASPVWADDNASTFSLGYAQSHTNHAGTLRGVRLANNYEMSPD
CCCEEEECCCCEEEEEECCCCEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
WGLTTSFAWLNGSQRYSDESSNGRVTTRYYSLLAGPSWKINNQLSLYSQVGPVLLHQRDH
CCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCEEECCEEEEHHHCCCEEEEECCC
GINESDSKVGYGYSAGVAYTPVSNVAITLGYEGADFDATHNSGSLNSNGFNLGVGYRF
CCCCCCCCCCCCEECCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MNKMLLAGSAGIVLLSAAASPVWADDNASTFSLGYAQSHTNHAGTLRGVRLANNYEMSPD
CCCEEEECCCCEEEEEECCCCEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
WGLTTSFAWLNGSQRYSDESSNGRVTTRYYSLLAGPSWKINNQLSLYSQVGPVLLHQRDH
CCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCEEECCEEEEHHHCCCEEEEECCC
GINESDSKVGYGYSAGVAYTPVSNVAITLGYEGADFDATHNSGSLNSNGFNLGVGYRF
CCCCCCCCCCCCEECCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1846140; 11677609 [H]