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The map label for this gene is xni [H]

Identifier: 29143234

GI number: 29143234

Start: 2965030

End: 2965845

Strand: Direct

Name: xni [H]

Synonym: t2880

Alternate gene names: 29143234

Gene position: 2965030-2965845 (Clockwise)

Preceding gene: 29143233

Following gene: 29143237

Centisome position: 61.88

GC content: 55.64

Gene sequence:

>816_bases
ATGCTCGCCTCCCCCCGCCGTGAATGTTACCCTACGCGCAGGTTTGTAAGGGAGAACACCGTGGCTGCTCATCTGCTTAT
CGTCGACGCGCTCAATTTGATTCGCCGTATTCACGCCGTTCAGGGATCGCCCTGTGTGGAAACCTGCCAACACGCGCTCG
ATCAATTGATTATCCACAGCCAGCCAACCCATGCCGTAGCGGTATTTGATGACGACGCGCGCAGCAGCGGCTGGCGTCAT
CAGCGTTTGCCGGACTACAAAGCAGGACGTCCGCCGATGCCTGACGATTTACATAATGAAATGCCCGCCCTACGCGCCGC
GTTTGAACAGCGCGGCGTACGCTGTTGGGCATCAGACGGTAACGAAGCGGACGATCTGGCGGCGACGCTGGCGCTAAAAG
TTACCGAAGCCGGACACCAGGCAACCATTGTGTCAACCGATAAAGGCTATTGCCAGTTGCTCTCTCCGGGATTGCGCATT
CGCGACTACTTCCAGAAACGCTGGCTGGACGCGCCGTTTATTGAAAAAGAGTTTGGCGTACTCCCCCGGCAGTTGCCGGA
TTACTGGGGTCTGGCAGGAATCAGTAGTTCGAAAGTCCCCGGCGTTGCCGGTATCGGCCCTAAAAGCGCGACCCAGCTGT
TGGTTCAGTTTCAAAATCTGGAGGGAATTTACGCCCATCTGGACGAGGTGCCGGAAAAGTGGCGCAAAAAGCTTGAGACG
CATAAAGAAATGGCATTTCTTTGCCGCGATATTGCACGTCTGCAAACCGATTTACATATCGACGGAAACTTACAGCAGCT
ACGGCTGGTACGGTAG

Upstream 100 bases:

>100_bases
ATTTTAGGATCTGTAGGCCGGATAAGGCGCTCGCCGCCATCCGGCTTTTGTTGCCTGATGGCGCTTCGCTTATCAGGTCT
ACGGATAGCGCGATTTCGCA

Downstream 100 bases:

>100_bases
TTTTGTTGCCGGATGGCGGCGTGAACGCCTTATCCGGCCTACAGAACTGCACGAAATGTAGAGCGGATAAGCGCAGCGCC
ATCCGGCAAAATTACCAGGC

Product: exonuclease IX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHSQPTHAVAVFDDDARSSGWRH
QRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRI
RDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKKLET
HKEMAFLCRDIARLQTDLHIDGNLQQLRLVR

Sequences:

>Translated_271_residues
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHSQPTHAVAVFDDDARSSGWRH
QRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRI
RDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKKLET
HKEMAFLCRDIARLQTDLHIDGNLQQLRLVR
>Mature_271_residues
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHSQPTHAVAVFDDDARSSGWRH
QRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRI
RDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKKLET
HKEMAFLCRDIARLQTDLHIDGNLQQLRLVR

Specific function: May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing [H]

COG id: COG0258

COG function: function code L; 5'-3' exonuclease (including N-terminal domain of PolI)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 5'-3' exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI226510970, Length=251, Percent_Identity=90.4382470119522, Blast_Score=477, Evalue=1e-136,
Organism=Escherichia coli, GI1790294, Length=261, Percent_Identity=32.183908045977, Blast_Score=130, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020046
- InterPro:   IPR020045
- InterPro:   IPR002421
- InterPro:   IPR020047
- InterPro:   IPR008918
- InterPro:   IPR022895 [H]

Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N [H]

EC number: 3.1.11.- [C]

Molecular weight: Translated: 30597; Mature: 30597

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
QPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDG
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
NEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGV
CCHHHHHHHHHHHEECCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHCCCCCCHHHHHCC
LPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKKLET
CCHHCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
HKEMAFLCRDIARLQTDLHIDGNLQQLRLVR
HHHHHHHHHHHHHHHHCCCCCCCHHHHEECC
>Mature Secondary Structure
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
QPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDG
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
NEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGV
CCHHHHHHHHHHHEECCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHCCCCCCHHHHHCC
LPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKKLET
CCHHCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
HKEMAFLCRDIARLQTDLHIDGNLQQLRLVR
HHHHHHHHHHHHHHHHCCCCCCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA