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The map label for this gene is ygcL [H]

Identifier: 29143199

GI number: 29143199

Start: 2916898

End: 2918433

Strand: Reverse

Name: ygcL [H]

Synonym: t2844

Alternate gene names: 29143199

Gene position: 2918433-2916898 (Counterclockwise)

Preceding gene: 29143202

Following gene: 29143198

Centisome position: 60.9

GC content: 51.24

Gene sequence:

>1536_bases
ATGGATTTAACCAAAGAGAAATGGCTTCCCGTCATATTCTCAAACGGCGATAAAAAGAAAATATCATTACGCGATCTTCT
GGATAACCGCATTCAGGATCTTGCCTATCCTCGGGCTGACTTTCAGGGGGCGGCATGGCAAATGCTGATTGGTATTTTAC
AATGTACCGTCGCGCCGGAAGATAAAGAAGAATGGGCAGATATCTGGCATGAAAGTATCGAATTCGAACAATGGGAGAAG
GCGTTAAATACGATTTCTCTGGCTCTACAGTTCGGCGAGCAAAAACCTTCCTTCCTGCAAAGTTTTGATCCTCTCGATAG
TGAATATGGTTCTATTGCCGGGCTGCTGGTGGATGCGCCGGGCGGGAATGCGCTCAAGCTCAATAAAGATCATTTTGTAA
AACGTGGCAACGTAGAACAAATATGTCCTCACTGCGCGGCGATAGCGCTATTTGCGATTCAAACCAATTCACCTGCCGGC
GGGGCGGGTTACCGGGTAGGGATGCGCGGCGGTGGTCCGCTGACTACGCTGGTGGTACCGCAGGAAGAAGATAAATATCC
ACTATGGAAAAAACTTTGGCTTAACGTTTTGCCGCAGGAAGAGCCGCCGAATGTTACACAGCATCCACTCATTTTTCCCT
GGCTTGCGCCGACGAAAACCAGCGAAAAAGCGGGGAATGTGGTCACACCGGATAATGCGCACCCCTTGCAAGCCTACTGG
GGGATGCCGCGGCGCATAGAACTGGATTTCACCCACACTGTGGCAGGTATCTGCGATTTGTGCGGGGAGCATCACGAATC
ACTGCTACTGCAAATGCGTAGTAAAAATTATGGCGTTCAGTACGACAGTTGGCTACATCCCTTCTCCCCATATCGGCAGG
CATTGAAAGATCCATCCGCACCCTGGCTGGCGTTTAAAGGGCAGCCGGGCGGGTTAAGTTATAAAGACTGGTTGGGGCTG
ATGCTCAATCGTGAGGATAAGTTCAACAAAATGCAGCCTGCAAAGGTCGTTCGTGCCGCTGGTCAGCGGAACAAAATGAG
CCTGTGGTGCTTTGCCTGGGATATGAATAAGGCCAAGGTCCGCTGCTGGTATCAGCACCGAATTCCGCTCATTAGCGTTT
CGCACGAAGAGCAATTTCTCGCTGCGCTTAACATTGTGCTGGTGCTGGCTAGTGAGTCGCTGTCGCTGTTACGGAACGCG
TTAAAGAGCGCCAAATTCGATTGTCCGAAAGAAGCCAAAATGGATTTTAGTATGGTGGATATCGCCTTCTGGCAGGAAAC
CGAACCCGCTTTTCGGACGTTGCAAGAGGCGCTGGCTGTCGATCCGCTTCGGCAGGATACACAGACTCGTCACGCAGTAA
GTCAGTGGGAGGCGGAATTAGCACACTATCTATTTCACGTTTTTGACCGTGATGCCCTGACCAACCCCGACTGCCCGGAC
GATATCCTGCAGCGCCAGCTGACGGCCCGACAGGATTTAGCCAGCAGCTATCGTAAACATAAAGCGCGCAAGGATGTGTT
GGCGCTGGTCGAATAA

Upstream 100 bases:

>100_bases
CTCCGATGACAGTATTTAAGAGATACCTCAGGACGGAATCTACCTATAGGTAGGTAATATTCCAAATTGGCTTAATAAAT
AGCCCTGCAGGAGTAAAGGT

Downstream 100 bases:

>100_bases
CAGAAGGAAGCCAAATATGCTGAATAGCAATACAGCAGTGTTATGCAGAATTCTCCACCCCGATGCGCAGAAGGCACTAC
TTGACTGGTTTGCTACGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 511

Protein sequence:

>511_residues
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEK
ALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAG
GAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYW
GMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGL
MLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNA
LKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPD
DILQRQLTARQDLASSYRKHKARKDVLALVE

Sequences:

>Translated_511_residues
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEK
ALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAG
GAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYW
GMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGL
MLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNA
LKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPD
DILQRQLTARQDLASSYRKHKARKDVLALVE
>Mature_511_residues
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEK
ALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAG
GAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYW
GMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGL
MLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNA
LKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPD
DILQRQLTARQDLASSYRKHKARKDVLALVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789118, Length=314, Percent_Identity=25.1592356687898, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013381 [H]

Pfam domain/function: PF09481 CRISPR_Cse1 [H]

EC number: NA

Molecular weight: Translated: 58127; Mature: 58127

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPE
CCCCCHHCCEEEECCCCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
DKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAP
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEEEECC
GGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVP
CCCEEEECHHHHCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCEEEEECCCCCEEEEEEC
QEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYW
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHC
GMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSA
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCC
PWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKV
CEEEEECCCCCCCHHHHHHHHHCCCHHCCCCCHHHHHHHCCCCCCEEEEEEEEECCCCEE
RCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVD
EEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEE
IAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPD
EEHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
DILQRQLTARQDLASSYRKHKARKDVLALVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPE
CCCCCHHCCEEEECCCCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
DKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAP
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEEEECC
GGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVP
CCCEEEECHHHHCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCEEEEECCCCCEEEEEEC
QEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYW
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHC
GMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSA
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCC
PWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKV
CEEEEECCCCCCCHHHHHHHHHCCCHHCCCCCHHHHHHHCCCCCCEEEEEEEEECCCCEE
RCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVD
EEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEE
IAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPD
EEHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
DILQRQLTARQDLASSYRKHKARKDVLALVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]