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The map label for this gene is rimM [H]

Identifier: 29142999

GI number: 29142999

Start: 2707177

End: 2707725

Strand: Reverse

Name: rimM [H]

Synonym: t2630

Alternate gene names: 29142999

Gene position: 2707725-2707177 (Counterclockwise)

Preceding gene: 29143000

Following gene: 29142998

Centisome position: 56.51

GC content: 49.91

Gene sequence:

>549_bases
ATGAGCAAGCAACTCGCCGCACAAGTACCCGCTGAACCGGTTGTACTGGGGAAAATGGGTTCTTCATACGGTATCCGTGG
TTGGCTCAGAGTGTTTTCCTCCACTGAAGACGCCGAAAGCATTTTTGACTATCAGCCCTGGTTTATCCAGAAGGCGGGTC
AGTGGCAGCAGGTACAGCTGGAAAGCTGGAAGCACCACAATCAGGATCTGATCATCAAGCTGAAAGGCGTTGACGATCGA
GATGCCGCGAATCTTCTGACCAATTGCGAAATTGTCGTGGATTCCTCGCAACTTCCTGCGCTTGAGGAGGGAGACTACTA
CTGGAAAGACCTGATGGGTTGCCAGGTAGTCACCGCTGAAGGCTACGATCTCGGTAAAGTTATCGACATGATGGAAACCG
GGTCGAATGACGTTCTCGTCATTAAGGCGAACCTGAAAGATGCATTTGGTATCAAGGAACGACTAGTACCGTTCCTCGAT
GGGCAGGTTATCAAGAAAGTCGATCTCGCTACTCGTACTATCGAAGTAGACTGGGATCCTGGTTTTTAA

Upstream 100 bases:

>100_bases
CATCGCTCACTGGGTTGGCCAGGGCGCAACCATTTCCGATCGCGTTGCGGCGCTGATCAAAGAAGTAAAAAAAGCAGCTT
AATCTGTCACGGTGGTCATG

Downstream 100 bases:

>100_bases
ACCACCGGATAAACGGTAATAAATGGCGTTATGGGGATTGGCTTGTGTTTATTGGCATCGTTAGCCTGTTTCCTGAAATG
TTCCGCGCAATTACCGATTA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDR
DAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
GQVIKKVDLATRTIEVDWDPGF

Sequences:

>Translated_182_residues
MSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDR
DAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
GQVIKKVDLATRTIEVDWDPGF
>Mature_181_residues
SKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDRD
AANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDG
QVIKKVDLATRTIEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=93.956043956044, Blast_Score=359, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20469; Mature: 20337

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL
CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCEEEEE
ESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAE
HHHCCCCCEEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHCCCCEEEEEC
GYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDP
CCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCHHHHEEEEEEEEEEEECCC
GF
CC
>Mature Secondary Structure 
SKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL
CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCEEEEE
ESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALEEGDYYWKDLMGCQVVTAE
HHHCCCCCEEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHCCCCEEEEEC
GYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLATRTIEVDWDP
CCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCHHHHEEEEEEEEEEEECCC
GF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA