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The map label for this gene is 29142963

Identifier: 29142963

GI number: 29142963

Start: 2667420

End: 2667962

Strand: Reverse

Name: 29142963

Synonym: t2588

Alternate gene names: NA

Gene position: 2667962-2667420 (Counterclockwise)

Preceding gene: 29142964

Following gene: 29142962

Centisome position: 55.68

GC content: 55.06

Gene sequence:

>543_bases
ATGGCTATCAACAATAGCGCGCAGAAATTCATCGCGCGCAACCGCGCGCCGCGCGTGCAGATTGAATATGACGTAGAGAT
TTACGGTTCCGAGAAAAAAATCGAGCTGCCGTTCGTGATGGCGGTGCTGGCCGATCTGGCCGGGAAACCGCGTGAAGAAC
TGCCGCCGGTGACGGATCGCAAATTCCTCGATATTGATATTGATAACTTCAATGAGCGCATGAAAGCCATTGCGCCGCGC
GTGGCGTTCGCTGTGCCGAATACGCTGACGGGTGAAGGTCAGTTGATGGTCGATATCACCCTGGAAAATATGGACGACTT
TTCGCCGGCACAGATTGCCCGCAAGGTGGACGCCCTGAACCAGTTACTGGAAGCCCGCACTCAACTGGCGAACCTCCAGA
CCTACATGGATGGCAAGGCCGGGGCGGAAAATCTGGTCAATAAACTGTTGCAGGACCCGACTCTGCTGAAAACGCTGGCG
AATGCGCCGAAATCGGCCGCTACCCAGCAAGGTGTGTCAGCGGATAATGAATCAGCGGAATAA

Upstream 100 bases:

>100_bases
AGAGATTATAAAAAAACTCTCTGAGTATGATTTTTAAAAACTGTACCGGTATACCGCTCCCCTTGCGGCAACCAGTTGAC
TAAAAAGGAAATGAAGGATT

Downstream 100 bases:

>100_bases
TGTCGAATTTTTAAGGAATTTTCATGGCAAACAGTAATATGCAGGCAACCGACGCGGTTGCTCAGGATACCGTCTCCGCA
TCCGGTGAATTTGATGCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; T6ss S; Conserved Protein; Cytoplasmic Protein SciH; Cytoplasmic Protein; Type VI Secretion System Core Protein; Type VI Secretion System Protein ImpB; Type VI Secretion System Protein; Protein ImpB; Type VI Secretion

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPR
VAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLA
NAPKSAATQQGVSADNESAE

Sequences:

>Translated_180_residues
MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPR
VAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLA
NAPKSAATQQGVSADNESAE
>Mature_179_residues
AINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPRV
AFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLAN
APKSAATQQGVSADNESAE

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19814; Mature: 19683

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDR
CCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCEECHHHHHHHHHHHCCCCHHHCCCCCCC
KFLDIDIDNFNERMKAIAPRVAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALN
EEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
QLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLANAPKSAATQQGVSADNESAE
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDR
CCCHHHHHHHHHCCCCEEEEEEEEEEECCCCEECHHHHHHHHHHHCCCCHHHCCCCCCC
KFLDIDIDNFNERMKAIAPRVAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALN
EEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
QLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLANAPKSAATQQGVSADNESAE
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA