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The map label for this gene is rtcB [H]

Identifier: 29142918

GI number: 29142918

Start: 2611603

End: 2612742

Strand: Reverse

Name: rtcB [H]

Synonym: t2536

Alternate gene names: 29142918

Gene position: 2612742-2611603 (Counterclockwise)

Preceding gene: 29142919

Following gene: 29142917

Centisome position: 54.52

GC content: 57.02

Gene sequence:

>1140_bases
ATGGGCAATTATATTCGTCCTTTATCAGATGTGGTATTTTCTATCGCATCGGATAACCTGTGGATCGAAGATTCCGCGAT
CCAACAATTATATACGACGGCTAAGTTAACCGGTATGAAACGCGTTATCGGGATGCCAGATCTGCATCCGGGGCGCGGCT
ATCCTATTGGCGCAGCCTTTTTCTCGCGTGGACGTTTTTATCCGGCGCTGGTCGGCAACGATATCGGCTGCGGCATGGCG
TTATGGCAAACGGATATTTTAGGGCGTAAATATAACGCCGATAAACTGGAGAAGCGGCTGGCGTCGCTGCCTGACGTGGC
GGACGCGCAGTGGCTGGAGGAGAATGTCCCCGCCGTAATGCAGCATCATTCGTGGCGCTCTGCGCTGGGTTCCATTGGCG
GCGGCAATCATTTTGCCGAGCTGCAGCAGGTCGATCGCATCGTCGATGCTGATTCGTTCGCTTTGTCGGGGTTGCAAAAA
GCGCAGTTATTACTGCTGGTACACAGTGGTTCACGCGGTCTGGGGCAAGCTATCCTGCGTCGTCATGTGGAGGCGTTTTC
GCATAACGGTTTGCCGGAAGATAGCGACGATGCGCGCCACTACCTTGCAGAACATGACGATGCGCTGGCATTTGCCCGCA
GTAATCGCGCGCTGATTGCCCGCCGGATACTGCAACAGCTCAGGGCTGAGGGCGAACCGCGGCTGGATGTGGCGCATAAC
TTCGTTGAACCCTGTACTGTCGCGGGTGAGGCGGGGTGGCTGCACCGTAAAGGCGCTACGCCAGATGGGCAGGGACTGGT
GATTATCCCCGGCTCGCGCGGCGATTATAGCTGGCTGGTGAAACCCGTCGTCAGCGAGGAGAGCCTCTTCTCCCTGGCGC
ACGGCGCGGGGCGCAAATGGATGCGTACCGAGTGTAAAGACCGGTTATCGGCAAAATTTACCCCGCGACAGCTCTGCCGT
ACTGGGATGGGTAGCCGGGTGATTTGCCGCGATCGCCAGCTCATTTATGAAGAAGCGCCGCAGGCGTATAAATCCATCGA
TAGCGTTGTGGATTGTCTGGCAGACGCCGGACTGATTACGCCAGTTGCCTGCCTGCGTCCGGTGCTGACGCTGAAAACCT
CAGGGGAGAAAAGCGCATGA

Upstream 100 bases:

>100_bases
TCTGAACGCACTTTGCAGACCTTTCCAGGATTAATTTTCTTTTATTGCCCTGGATTAGTCTGCCATTTCCTGATTTTTTA
ATTCATATATGGAATGGTAT

Downstream 100 bases:

>100_bases
TCTTACTGCAACTTTCTTCTGCGCAGGGACCGGACGAGTGTTGTCTGGCGGTAAAAAAAGCGCTGGATTGTCTGACGAAA
GAAGCCGCCAGAGAAAAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MGNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMKRVIGMPDLHPGRGYPIGAAFFSRGRFYPALVGNDIGCGMA
LWQTDILGRKYNADKLEKRLASLPDVADAQWLEENVPAVMQHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQK
AQLLLLVHSGSRGLGQAILRRHVEAFSHNGLPEDSDDARHYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHN
FVEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSEESLFSLAHGAGRKWMRTECKDRLSAKFTPRQLCR
TGMGSRVICRDRQLIYEEAPQAYKSIDSVVDCLADAGLITPVACLRPVLTLKTSGEKSA

Sequences:

>Translated_379_residues
MGNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMKRVIGMPDLHPGRGYPIGAAFFSRGRFYPALVGNDIGCGMA
LWQTDILGRKYNADKLEKRLASLPDVADAQWLEENVPAVMQHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQK
AQLLLLVHSGSRGLGQAILRRHVEAFSHNGLPEDSDDARHYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHN
FVEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSEESLFSLAHGAGRKWMRTECKDRLSAKFTPRQLCR
TGMGSRVICRDRQLIYEEAPQAYKSIDSVVDCLADAGLITPVACLRPVLTLKTSGEKSA
>Mature_378_residues
GNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMKRVIGMPDLHPGRGYPIGAAFFSRGRFYPALVGNDIGCGMAL
WQTDILGRKYNADKLEKRLASLPDVADAQWLEENVPAVMQHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQKA
QLLLLVHSGSRGLGQAILRRHVEAFSHNGLPEDSDDARHYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHNF
VEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSEESLFSLAHGAGRKWMRTECKDRLSAKFTPRQLCRT
GMGSRVICRDRQLIYEEAPQAYKSIDSVVDCLADAGLITPVACLRPVLTLKTSGEKSA

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=443, Percent_Identity=27.5395033860045, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI2367224, Length=414, Percent_Identity=29.7101449275362, Blast_Score=132, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI17506665, Length=444, Percent_Identity=26.5765765765766, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24585217, Length=442, Percent_Identity=28.0542986425339, Blast_Score=103, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 41635; Mature: 41504

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMKRVIGMPDLHPGRGYPIGAAF
CCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
FSRGRFYPALVGNDIGCGMALWQTDILGRKYNADKLEKRLASLPDVADAQWLEENVPAVM
HHCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHH
QHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQKAQLLLLVHSGSRGLGQAILR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHEEEEEEEECCCCCHHHHHHH
RHVEAFSHNGLPEDSDDARHYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHN
HHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHH
FVEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSEESLFSLAHGAGRKW
HHCCHHCCCCCCCEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHCCCHH
MRTECKDRLSAKFTPRQLCRTGMGSRVICRDRQLIYEEAPQAYKSIDSVVDCLADAGLIT
HHHHHHHHHCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
PVACLRPVLTLKTSGEKSA
HHHHHHHHHHEECCCCCCC
>Mature Secondary Structure 
GNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMKRVIGMPDLHPGRGYPIGAAF
CCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
FSRGRFYPALVGNDIGCGMALWQTDILGRKYNADKLEKRLASLPDVADAQWLEENVPAVM
HHCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHH
QHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQKAQLLLLVHSGSRGLGQAILR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHEEEEEEEECCCCCHHHHHHH
RHVEAFSHNGLPEDSDDARHYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHN
HHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHH
FVEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSEESLFSLAHGAGRKW
HHCCHHCCCCCCCEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHCCCHH
MRTECKDRLSAKFTPRQLCRTGMGSRVICRDRQLIYEEAPQAYKSIDSVVDCLADAGLIT
HHHHHHHHHCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
PVACLRPVLTLKTSGEKSA
HHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]