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The map label for this gene is yobV [H]

Identifier: 29142841

GI number: 29142841

Start: 2522505

End: 2523197

Strand: Reverse

Name: yobV [H]

Synonym: t2453

Alternate gene names: 29142841

Gene position: 2523197-2522505 (Counterclockwise)

Preceding gene: 29142842

Following gene: 29142840

Centisome position: 52.65

GC content: 52.24

Gene sequence:

>693_bases
ATGACCAGACGCGCTGACCGTTTGTTTCAGATCGTGCAAATTTTGCGGGGTAGACGACTGACGACGGCAGCGCTGTTGGC
ACAGCGGCTTGCGGTTTCTGAACGGACGATTTATCGCGATATTCGCGATCTGTCGTTATCCGGTGTGCCTGTCGAAGGTG
AAGCGGGGAGCGGATACCGTTTAATGGCGGGTTTTGATCTGCCGCCCTTGATGCTTACCCATCGTGAATCGGAAGCACTG
ATGGTGGCTATACGGTTATTGAAAACCTGGGGTGGCGATTCGCTATCGCGCGAGCTTGAATCCGCCCAGGAAAAAGTGTT
GGCTATTTTACCGGAAGAGAGCCGTCGTAAAGCGGAGCAGACACGGATTTACGCTCCGGATTTGGGTACATCTCCACATT
CGCGCAGCGCGTTTGATCTTATCCATCAGGCTGTTTCGGCGCAGCAGGTGTTGGCGCTACATTATCGTGATGAAGCGGGG
CATCTCTCTTCGCGGGATATACAACCTCTGGGATTGTTTTTCTGGGGAGAGCACTGGCTACTGGTTGCCTGGTGTGAGAG
ACGGGAAGACTATCGGTGTTTTCGCCTCGATCGCTGTTTACAAATTACTCCGCTTAACCGGCGATTTCGTGAAACAATCG
ACCGTTCTTTGCGTGATTTTTTGCGTAAAGTCGAGCACGAAAAAATGCCGTAA

Upstream 100 bases:

>100_bases
GGAGATGACATTGGAACCATCGCGTTGTTTATTGACAGCGAAGGTAACCGAATAGGTTTACATCAACCTGCGTGATATTT
GCTAAATGTAGAGAGTCAAT

Downstream 100 bases:

>100_bases
GATGTGATAGCGATACCTCCAACGCTTGTAAAACGGGTTGATTGGTCATCAGTTTGCCTGAAATAGCCTTCCTTACCTGG
ATATATAAGTTGCACAGAAT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MTRRADRLFQIVQILRGRRLTTAALLAQRLAVSERTIYRDIRDLSLSGVPVEGEAGSGYRLMAGFDLPPLMLTHRESEAL
MVAIRLLKTWGGDSLSRELESAQEKVLAILPEESRRKAEQTRIYAPDLGTSPHSRSAFDLIHQAVSAQQVLALHYRDEAG
HLSSRDIQPLGLFFWGEHWLLVAWCERREDYRCFRLDRCLQITPLNRRFRETIDRSLRDFLRKVEHEKMP

Sequences:

>Translated_230_residues
MTRRADRLFQIVQILRGRRLTTAALLAQRLAVSERTIYRDIRDLSLSGVPVEGEAGSGYRLMAGFDLPPLMLTHRESEAL
MVAIRLLKTWGGDSLSRELESAQEKVLAILPEESRRKAEQTRIYAPDLGTSPHSRSAFDLIHQAVSAQQVLALHYRDEAG
HLSSRDIQPLGLFFWGEHWLLVAWCERREDYRCFRLDRCLQITPLNRRFRETIDRSLRDFLRKVEHEKMP
>Mature_229_residues
TRRADRLFQIVQILRGRRLTTAALLAQRLAVSERTIYRDIRDLSLSGVPVEGEAGSGYRLMAGFDLPPLMLTHRESEALM
VAIRLLKTWGGDSLSRELESAQEKVLAILPEESRRKAEQTRIYAPDLGTSPHSRSAFDLIHQAVSAQQVLALHYRDEAGH
LSSRDIQPLGLFFWGEHWLLVAWCERREDYRCFRLDRCLQITPLNRRFRETIDRSLRDFLRKVEHEKMP

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 26664; Mature: 26533

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRADRLFQIVQILRGRRLTTAALLAQRLAVSERTIYRDIRDLSLSGVPVEGEAGSGYR
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
LMAGFDLPPLMLTHRESEALMVAIRLLKTWGGDSLSRELESAQEKVLAILPEESRRKAEQ
EEECCCCCCHHEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCHHHHHHHH
TRIYAPDLGTSPHSRSAFDLIHQAVSAQQVLALHYRDEAGHLSSRDIQPLGLFFWGEHWL
CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEECCCEE
LVAWCERREDYRCFRLDRCLQITPLNRRFRETIDRSLRDFLRKVEHEKMP
EEEEHHCCCCCHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRRADRLFQIVQILRGRRLTTAALLAQRLAVSERTIYRDIRDLSLSGVPVEGEAGSGYR
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
LMAGFDLPPLMLTHRESEALMVAIRLLKTWGGDSLSRELESAQEKVLAILPEESRRKAEQ
EEECCCCCCHHEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCHHHHHHHH
TRIYAPDLGTSPHSRSAFDLIHQAVSAQQVLALHYRDEAGHLSSRDIQPLGLFFWGEHWL
CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEECCCEE
LVAWCERREDYRCFRLDRCLQITPLNRRFRETIDRSLRDFLRKVEHEKMP
EEEEHHCCCCCHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]