Click here to switch to the map view.

The map label for this gene is ybaP [H]

Identifier: 29142754

GI number: 29142754

Start: 2431199

End: 2431993

Strand: Direct

Name: ybaP [H]

Synonym: t2364

Alternate gene names: 29142754

Gene position: 2431199-2431993 (Clockwise)

Preceding gene: 29142753

Following gene: 29142755

Centisome position: 50.73

GC content: 56.48

Gene sequence:

>795_bases
ATGGAGCTATTAAATCAACTTAAACGTTTATGCCGCGCGCTGCGTGGTACCCCAAATAGTTGGCCTGCTATCGATCTCTC
CCTGCCCGGCGGTCGTCATCTGCATCTGGTTGGCAGTATTCATATGGGGACGCGCGATATAGCTCCTCTTCCAGCAAAGC
TGGTGAAAAAGCTACGCCAGGCCGACGCGCTGGTCGTTGAAGCGGATATTTCCGGTAACGAAACGCCATTCAGCAATCTC
CCCAAATGCCCGCCGTTGGTCGAACGTCTCAGCGCCGGGCTGCTAAACACACTGGAAAAACGGGTCAGCGAGTTGGGTAT
GCCGCTGATCCATTTTGATAATCAACCTTTATGGCAGATAGCTATGGTGCTACAGGCCACGCAGGCGCAACGGCTGGGAT
TGCGCCCGGACTATGGCATTGATTATCAGCTATTACAGGCTGCCCGCGAAATGTCGCTGCCGGTGCAAGAGCTGGAAGGG
GCGAAACACCAGCTCGAACTACTATGCGATCTGCCCGATGGCGGGATGGCGCTGCTCGACGACACGCTGACGCACTGGCA
CACCAACGCACGGCTTTTGCAGGTGATGATCGGCTGGTGGCTTGAACAGCCGCCGACCAGCATCGGCGCTTCGCTCCCCA
GAACGTTTAGCCAACCGCTGTATGATGTACTGATGGTGAAACGCAATGAAGCCTGGCGCGACGCGCTGCTGGCACTGCCA
CCGGGACGCTACGTGGTAGCCGTAGGGGCGCTACATCTGTACGGCGAAGGCAACCTACCGCAAATATTGAAATAA

Upstream 100 bases:

>100_bases
GACGGCAGCGAACTACCCGACTGATCGTTGACGTCCCGTCAGGGCGCATTGCGCCCTTTTCTCCAACGCGCTAGCATGAG
CTTTTTCAAAGGGAGCGCGT

Downstream 100 bases:

>100_bases
AAAATGGCCAATATCGCTATTGGCCCGTCAAAGAGGAATTTCATCGTTATTATTATCCCGACGCTTTCGCTTCGGATCTT
CAGATTGTCGCTCAAAGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MELLNQLKRLCRALRGTPNSWPAIDLSLPGGRHLHLVGSIHMGTRDIAPLPAKLVKKLRQADALVVEADISGNETPFSNL
PKCPPLVERLSAGLLNTLEKRVSELGMPLIHFDNQPLWQIAMVLQATQAQRLGLRPDYGIDYQLLQAAREMSLPVQELEG
AKHQLELLCDLPDGGMALLDDTLTHWHTNARLLQVMIGWWLEQPPTSIGASLPRTFSQPLYDVLMVKRNEAWRDALLALP
PGRYVVAVGALHLYGEGNLPQILK

Sequences:

>Translated_264_residues
MELLNQLKRLCRALRGTPNSWPAIDLSLPGGRHLHLVGSIHMGTRDIAPLPAKLVKKLRQADALVVEADISGNETPFSNL
PKCPPLVERLSAGLLNTLEKRVSELGMPLIHFDNQPLWQIAMVLQATQAQRLGLRPDYGIDYQLLQAAREMSLPVQELEG
AKHQLELLCDLPDGGMALLDDTLTHWHTNARLLQVMIGWWLEQPPTSIGASLPRTFSQPLYDVLMVKRNEAWRDALLALP
PGRYVVAVGALHLYGEGNLPQILK
>Mature_264_residues
MELLNQLKRLCRALRGTPNSWPAIDLSLPGGRHLHLVGSIHMGTRDIAPLPAKLVKKLRQADALVVEADISGNETPFSNL
PKCPPLVERLSAGLLNTLEKRVSELGMPLIHFDNQPLWQIAMVLQATQAQRLGLRPDYGIDYQLLQAAREMSLPVQELEG
AKHQLELLCDLPDGGMALLDDTLTHWHTNARLLQVMIGWWLEQPPTSIGASLPRTFSQPLYDVLMVKRNEAWRDALLALP
PGRYVVAVGALHLYGEGNLPQILK

Specific function: Unknown

COG id: COG3735

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786689, Length=264, Percent_Identity=65.1515151515152, Blast_Score=356, Evalue=1e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010891 [H]

Pfam domain/function: PF07446 GumN [H]

EC number: NA

Molecular weight: Translated: 29346; Mature: 29346

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLNQLKRLCRALRGTPNSWPAIDLSLPGGRHLHLVGSIHMGTRDIAPLPAKLVKKLRQ
CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHH
ADALVVEADISGNETPFSNLPKCPPLVERLSAGLLNTLEKRVSELGMPLIHFDNQPLWQI
CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHH
AMVLQATQAQRLGLRPDYGIDYQLLQAAREMSLPVQELEGAKHQLELLCDLPDGGMALLD
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCHHEEEEEEECCCCCHHHHH
DTLTHWHTNARLLQVMIGWWLEQPPTSIGASLPRTFSQPLYDVLMVKRNEAWRDALLALP
HHHHHHCCHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCC
PGRYVVAVGALHLYGEGNLPQILK
CCCEEEEEEEEEEECCCCCHHHCC
>Mature Secondary Structure
MELLNQLKRLCRALRGTPNSWPAIDLSLPGGRHLHLVGSIHMGTRDIAPLPAKLVKKLRQ
CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHH
ADALVVEADISGNETPFSNLPKCPPLVERLSAGLLNTLEKRVSELGMPLIHFDNQPLWQI
CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHH
AMVLQATQAQRLGLRPDYGIDYQLLQAAREMSLPVQELEGAKHQLELLCDLPDGGMALLD
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCHHEEEEEEECCCCCHHHHH
DTLTHWHTNARLLQVMIGWWLEQPPTSIGASLPRTFSQPLYDVLMVKRNEAWRDALLALP
HHHHHHCCHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCC
PGRYVVAVGALHLYGEGNLPQILK
CCCEEEEEEEEEEECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]