Click here to switch to the map view.

The map label for this gene is ybgL [H]

Identifier: 29142571

GI number: 29142571

Start: 2224441

End: 2225175

Strand: Reverse

Name: ybgL [H]

Synonym: t2162

Alternate gene names: 29142571

Gene position: 2225175-2224441 (Counterclockwise)

Preceding gene: 29142572

Following gene: 29142570

Centisome position: 46.44

GC content: 59.46

Gene sequence:

>735_bases
ATGAACATTGATTTAAATGCGGATTTGGGCGAAGGTTGCGCCAGCGACAGCGAATTATTAACGCTGGTCTCCTCCGCTAA
TATCGCCTGTGGTTTTCACGCCGGTGATGCGCAAACCATGCTGACCTGCGTGCGCGAGGCGCTGAAAAACGGCGTGGCGA
TCGGCGCGCATCCCAGCTTTCCGGATCGGGATAATTTTGGGCGGACGGCGATGGTTTTGCCGCCGGAAACGGTATACGCC
CAGACGCTGTACCAAATCGGCGCGCTGGGGGCGATTGTCCAGGCGCAAGGCGGCGTGATGCGCCATGTCAAACCGCACGG
TATGCTCTATAACCAGGCGGCGAAAGATCCCCATCTGGCACAGGCGATTGCGAAAGCGGTACACGACTATGATCCGTCAC
TGATACTGGTTGGACTGGCGGGAAGTGAGCTGATCCGGGCCGGTGAACGCCATCGCCTGGTGACGCGGCAGGAGGTGTTT
GCCGATCGCGGCTATCAGGCCGACGGTAGCCTGGTGCCGCGCATGCAACCTGGCGCGCTGATTCACGACGAAGAGCAGGC
GCTGGCGCAAACGCTGGATATGGTACAAGCCGGGAGAGTGAAAAGCGTTACTGGCGTGTGGACGACTGTCACGGCGCAAA
CGGTGTGCATTCATGGCGACGGCGAGTATGCGCTTGCATTCGCACGCAGGCTACGCGCCGCGTTCAATGCGCGTAATGTA
CACGTTATTGCCTGA

Upstream 100 bases:

>100_bases
GAACAACCGATCCATTTTGTGCAATGTTCGCTGGAGGAGGCGCTCAACGCGCGCCGCGAGCGTCGGCGCTATCTGGAACA
GCTTACCTGGCGACTTCAGC

Downstream 100 bases:

>100_bases
GAGCCCGACGATTGAAGCTATTATATTACGGCTGCTAAAAATTATCGTGTTCTGTTCTCTTAATGTCAGGAAGAGGGATT
TATTCAATACTATATAAATC

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MNIDLNADLGEGCASDSELLTLVSSANIACGFHAGDAQTMLTCVREALKNGVAIGAHPSFPDRDNFGRTAMVLPPETVYA
QTLYQIGALGAIVQAQGGVMRHVKPHGMLYNQAAKDPHLAQAIAKAVHDYDPSLILVGLAGSELIRAGERHRLVTRQEVF
ADRGYQADGSLVPRMQPGALIHDEEQALAQTLDMVQAGRVKSVTGVWTTVTAQTVCIHGDGEYALAFARRLRAAFNARNV
HVIA

Sequences:

>Translated_244_residues
MNIDLNADLGEGCASDSELLTLVSSANIACGFHAGDAQTMLTCVREALKNGVAIGAHPSFPDRDNFGRTAMVLPPETVYA
QTLYQIGALGAIVQAQGGVMRHVKPHGMLYNQAAKDPHLAQAIAKAVHDYDPSLILVGLAGSELIRAGERHRLVTRQEVF
ADRGYQADGSLVPRMQPGALIHDEEQALAQTLDMVQAGRVKSVTGVWTTVTAQTVCIHGDGEYALAFARRLRAAFNARNV
HVIA
>Mature_244_residues
MNIDLNADLGEGCASDSELLTLVSSANIACGFHAGDAQTMLTCVREALKNGVAIGAHPSFPDRDNFGRTAMVLPPETVYA
QTLYQIGALGAIVQAQGGVMRHVKPHGMLYNQAAKDPHLAQAIAKAVHDYDPSLILVGLAGSELIRAGERHRLVTRQEVF
ADRGYQADGSLVPRMQPGALIHDEEQALAQTLDMVQAGRVKSVTGVWTTVTAQTVCIHGDGEYALAFARRLRAAFNARNV
HVIA

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family [H]

Homologues:

Organism=Escherichia coli, GI1786931, Length=244, Percent_Identity=80.327868852459, Blast_Score=406, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR005501 [H]

Pfam domain/function: PF03746 LamB_YcsF [H]

EC number: NA

Molecular weight: Translated: 26077; Mature: 26077

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDLNADLGEGCASDSELLTLVSSANIACGFHAGDAQTMLTCVREALKNGVAIGAHPSF
CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCC
PDRDNFGRTAMVLPPETVYAQTLYQIGALGAIVQAQGGVMRHVKPHGMLYNQAAKDPHLA
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEHHHCCCCHHHH
QAIAKAVHDYDPSLILVGLAGSELIRAGERHRLVTRQEVFADRGYQADGSLVPRMQPGAL
HHHHHHHHCCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
IHDEEQALAQTLDMVQAGRVKSVTGVWTTVTAQTVCIHGDGEYALAFARRLRAAFNARNV
EECHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCE
HVIA
EEEC
>Mature Secondary Structure
MNIDLNADLGEGCASDSELLTLVSSANIACGFHAGDAQTMLTCVREALKNGVAIGAHPSF
CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCC
PDRDNFGRTAMVLPPETVYAQTLYQIGALGAIVQAQGGVMRHVKPHGMLYNQAAKDPHLA
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEHHHCCCCHHHH
QAIAKAVHDYDPSLILVGLAGSELIRAGERHRLVTRQEVFADRGYQADGSLVPRMQPGAL
HHHHHHHHCCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
IHDEEQALAQTLDMVQAGRVKSVTGVWTTVTAQTVCIHGDGEYALAFARRLRAAFNARNV
EECHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCE
HVIA
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA