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The map label for this gene is ybhC [H]

Identifier: 29142516

GI number: 29142516

Start: 2164890

End: 2166173

Strand: Direct

Name: ybhC [H]

Synonym: t2101

Alternate gene names: 29142516

Gene position: 2164890-2166173 (Clockwise)

Preceding gene: 29142510

Following gene: 29142518

Centisome position: 45.18

GC content: 57.09

Gene sequence:

>1284_bases
GTGAATACATTATCGGTTTCCCGTCTGGCGCTGGCACTGGCTTTTGGCGTGACGCTGAGCGCCTGTAGCTCTACGCCACC
CGATCAGATCCCTTCCGATCAAACCGCGCCTGGCACCGCCTCGCGCCCCATTCTGTCGGCAAATGAAGCGAAAAACTTCG
TTGCTGCGCGCTATTTTGCCTCCCTGACGCCGAATACCGCCCCGTGGTCGCCGTCGCCGATTACCCTGCCCGCACAGCCT
GACTTTGTGGTGGGGCCGGCAGGTACGCCAGGCGTTACGCACACCTCGATTCAGGCCGCGATCGATGCGGCAATGGTTAA
ACGCACGAACAAACGCCAGTACATTGCTATTATGCCGGGCGACTATCAGGGGACCGTGTATGTTCCCGCCGCGCCGGGAA
GTCTGACCCTGTACGGGACCGGTGAAAAACCGATCGATGTAAAAATTGGGATGGCGATTGATGGTGAAATGAGTGTCGCT
GACTGGCGCCGCGCAGTGAATCCCGGCGGGAAATATATGCCTGGTAAACCCGCCTGGTATATGTTCGATAACTGCCAAAG
CAAACACGCCGCGACGATCGGTGTAATGTGTTCTGCCGCGTTCTGGTCGCAGAATAACGGTCTGCAGCTACAAAATCTGA
CCATCGAGAACACGCTGGGCGACAGTGTCGATGCCGGAAACCATCCGGCGGTGGCGCTGCGTACCGATGGCGACAAAGTC
CAGATTAACAAGGTCAATATCCTTGGCCGCCAGAACACCTTCTTTGTGACCAACAGCGGCGTGCAGAACCGTCTGCAAAC
CGATCGCCAGCCGCGTACGCTGGTGACGAACAGCTATATTGAAGGCGATGTGGATATGGTTTCCGGACGCGGCGCCGTGG
TGTTCGATAACACCAACTTCCAGGTCGTCAACTCCCGCACACAGCAGGAAGCCTACGTCTTCGCCCCGGCGACGCTGTCC
AATATTTACTATGGCTTTTTGGCGATCAACAGCCGCTTTAACGCCTCCGGCGATGGCGTTGCGCAGCTTGGCCGCTCGCT
GGATGTCGACGCCAACACCAACGGTCAGGTCGTGATCCGCGACAGCGTGATTAACGAGGGCTTCAACGTTGCCAAACCGT
GGGCCGACGCGGTCATCTCGAAACGTCCGTTTGCTGGAAATACGGGAACCGTGGATGACAAAGACGAGGTGCAGCGTAAT
CTGAACGACACGAACTACAACCGCATGTGGGAATACAACAACCGCGGTGTAGGCAGTAAAGTAGTGACGGAACCTAAGCA
GTAA

Upstream 100 bases:

>100_bases
AGGAACTTTTTACCTTTTCGCCTTCCCGTTTCGTTCAACTTAGTATAAAAAAGCAGGCTTCAATGGATGTCATTTAACTT
TTTCAAGCCCGGAGCAACCT

Downstream 100 bases:

>100_bases
TCGCCGTTCCGGTTCAGGCTTATAAACGGGCCGCCGCAGCAGATGTGGCGGCCCGTGGTTTTACTGCAAGCGATGTTTAT
TGAAATTAATCAGGCATCCT

Product: pectinesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPILSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQP
DFVVGPAGTPGVTHTSIQAAIDAAMVKRTNKRQYIAIMPGDYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVA
DWRRAVNPGGKYMPGKPAWYMFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKV
QINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVTNSYIEGDVDMVSGRGAVVFDNTNFQVVNSRTQQEAYVFAPATLS
NIYYGFLAINSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSVINEGFNVAKPWADAVISKRPFAGNTGTVDDKDEVQRN
LNDTNYNRMWEYNNRGVGSKVVTEPKQ

Sequences:

>Translated_427_residues
MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPILSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQP
DFVVGPAGTPGVTHTSIQAAIDAAMVKRTNKRQYIAIMPGDYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVA
DWRRAVNPGGKYMPGKPAWYMFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKV
QINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVTNSYIEGDVDMVSGRGAVVFDNTNFQVVNSRTQQEAYVFAPATLS
NIYYGFLAINSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSVINEGFNVAKPWADAVISKRPFAGNTGTVDDKDEVQRN
LNDTNYNRMWEYNNRGVGSKVVTEPKQ
>Mature_427_residues
MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPILSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQP
DFVVGPAGTPGVTHTSIQAAIDAAMVKRTNKRQYIAIMPGDYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVA
DWRRAVNPGGKYMPGKPAWYMFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKV
QINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVTNSYIEGDVDMVSGRGAVVFDNTNFQVVNSRTQQEAYVFAPATLS
NIYYGFLAINSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSVINEGFNVAKPWADAVISKRPFAGNTGTVDDKDEVQRN
LNDTNYNRMWEYNNRGVGSKVVTEPKQ

Specific function: Putative thioesterase. Does not bind pectin, and has no pectinesterase activity [H]

COG id: COG4677

COG function: function code G; Pectin methylesterase

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pectinesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786989, Length=427, Percent_Identity=86.8852459016393, Blast_Score=776, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012334
- InterPro:   IPR011050
- InterPro:   IPR018040
- InterPro:   IPR000070 [H]

Pfam domain/function: PF01095 Pectinesterase [H]

EC number: NA

Molecular weight: Translated: 45938; Mature: 45938

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPILSANEAKNFVAARYFA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHEEHHH
SLTPNTAPWSPSPITLPAQPDFVVGPAGTPGVTHTSIQAAIDAAMVKRTNKRQYIAIMPG
HCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
DYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVADWRRAVNPGGKYMPGKPAWY
CCCCEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEE
MFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKV
EECCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEE
QINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVTNSYIEGDVDMVSGRGAVVFDNTNF
EEEEEEEEECCCEEEEECCCHHHHHHCCCCCCEEEECCEECCCEEEECCCCEEEEECCCE
QVVNSRTQQEAYVFAPATLSNIYYGFLAINSRFNASGDGVAQLGRSLDVDANTNGQVVIR
EEEECCCCCCEEEECCHHHHHEEEEEEEEECCCCCCCCHHHHHCCEEECCCCCCCCEEEE
DSVINEGFNVAKPWADAVISKRPFAGNTGTVDDKDEVQRNLNDTNYNRMWEYNNRGVGSK
ECHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCC
VVTEPKQ
CCCCCCC
>Mature Secondary Structure
MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPILSANEAKNFVAARYFA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHEEHHH
SLTPNTAPWSPSPITLPAQPDFVVGPAGTPGVTHTSIQAAIDAAMVKRTNKRQYIAIMPG
HCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
DYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVADWRRAVNPGGKYMPGKPAWY
CCCCEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEE
MFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKV
EECCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEE
QINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVTNSYIEGDVDMVSGRGAVVFDNTNF
EEEEEEEEECCCEEEEECCCHHHHHHCCCCCCEEEECCEECCCEEEECCCCEEEEECCCE
QVVNSRTQQEAYVFAPATLSNIYYGFLAINSRFNASGDGVAQLGRSLDVDANTNGQVVIR
EEEECCCCCCEEEECCHHHHHEEEEEEEEECCCCCCCCHHHHHCCEEECCCCCCCCEEEE
DSVINEGFNVAKPWADAVISKRPFAGNTGTVDDKDEVQRNLNDTNYNRMWEYNNRGVGSK
ECHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCC
VVTEPKQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 8905232; 331474; 7567469; 10806384 [H]