| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
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The map label for this gene is ybiO [H]
Identifier: 29142482
GI number: 29142482
Start: 2122657
End: 2124879
Strand: Direct
Name: ybiO [H]
Synonym: t2061
Alternate gene names: 29142482
Gene position: 2122657-2124879 (Clockwise)
Preceding gene: 29142481
Following gene: 29142483
Centisome position: 44.3
GC content: 54.66
Gene sequence:
>2223_bases ATGCGGTGGACCCTGTTCATCCTTTTTTGTCTACTGGGCGCGCCTGCCCATGCGGTCGCCATACCCGGCGTGACCACGGG GACATCAACCAGCCAGCAAGCAGCGCCAGAGCCCAGTCCTGAACAAAAAAAAGCGGCCTATGCGGCCCTGGCTGACGTAC TGGAGAACGAGGCTTCACGTAACGAATTGATAGCGCAACTCCGCGAAGCCTCAACCACGCCGCCGACCGAGCCAGCGCCA GCGCTTGCCCCGCCTGCGGCCAAAGATGAGAAAACGGTACTGGAGAACGTCACCACCGTTACCCGTCAGTACGGCGATGC TTTCGCTACCCGTTTCGCCCAGCTTTATCGCAACATCACCGATGCGCCGTACAAGCCGTTTAACTCGCAAACCTTCACCA ACGCGTTAACCCACTTTTTATTTCTGGCCGTCGCGGTATTTGGTTTTTATAGCGTGATACGGCTTTGCGCCCTGCCGTTA TATCGAAAAATGGGCCTGTGGGCGCGCAAGAAAAACCGTGAACGCAGCAACTGGTTACAGCTCCCGGCGATGATCGCCGG CGCGTTTATTATCGACCTGCTGCTACTGGCGCTCACCTTATTTATCGGTCAGATGCTCAGTGATAATTTCCATGCCGGAA GTCGAACTATCGCTTTTCAGCAAAGCCTGTTCCTGAATGCCTTCGCGCTGATAGAGTTCTTTAAAGCGATTCTGCGGCTT ATTTTTTGCCCTAATGTACCGGAATTACGCCCATTCGCGATTCAGGATGCGACAGCGCGTTACTGGAATCGCCGTATGAG TTCCCTTAGCAGTTTGATTGGCTACGGGCTGATTGTTGCCGTTCCGATTATTTCCAACCAGGTGAATGTTCAGGTCGGGG CGATGGCGAACGTGGCGATCATGCTCTGCATCACCATCTGGGCGCTGTACCTGATCTTTAAAAACAAAGCGGAGATTACG CAACATTTATTAAGTCTGGCGGAACGATCATTAGCCTTTTTTAGCCTGTTTATCCGCGCCTTTGCGCTGGTGTGGCACTG GCTGGCCAGCGCTTACTTTATCGTGCTGTTTTTCTTCTCGTTATTCGACCCAGGCAATAGCCTGAAGTTTATGATGGGCG CGACCGTGCGCAGTCTGGCGATTATTGGCATCGCCGCGTTTATCTCCGGTATGTTTACCCGCTGGATAGCGAAAACCATC ACCCTGTCGCCCCATACGCAGCGCAATTACCCGGAATTACAAAAGCGGCTTAACGGCTGGCTCTCCTCGGCGCTAAAAGT CGCACGCTTTTTGACCGTCTGCGTCGCCGTTATGCTGTTGCTCAACGCCTGGGGGCTATTCGATTTCTGGCACTGGCTAC ATTATGGCGCGGGGGAAAAGATGGTCGATATCCTCATCCGTATCGCGTTAATCTTATTCTTCTCCGCCGTGGGATGGACG ATTCTCGCCAGTCTGATTGAGAATCGCCTGGCCTCCGATATTCATAGTCGCCCGCTACCCAGCGCCCGCACGCGCACGCT GCTGACGCTGTTCCGCAATGCGCTGGCAGTGATTATCAGTACCATAACCATCATGATCGTGTTATCGGAAATCGGCGTCA ATATCGCGCCGTTGCTGGCTGGCGCGGGGGCGTTAGGTCTGGCTATCTCTTTCGGTTCGCAAACCCTGGTGAAAGATATT ATTACCGGCGTTTTTATTCAGTTTGAAAACGGGATGAATACCGGCGACTTAGTCACCATAGGCCCGCTGATGGGGACGGT CGAAAGAATGTCGATTCGTTCCGTCGGCGTGCGGCAGGATACCGGGGCATACCATATTATCCCGTGGTCCTCGATCACCA CTTTCGCCAACTTTGTGCGCGGTATCGGCTCTGTTGTCGCCAACTATGACGTGGATCGCCATGAGGATGCGGATAAAGCG AATCAGGCGCTGAAAGACGCGGTAACGGCGCTGATGGAGACGGAGGATATTCGCGGGCTGATTATCGGCGAACCCACGTT CGCCGGTATTGTCGGTTTAACGAACACGGCGTTTACTTTACGCGTGTCGTTCACCACGCTACCGCTCAAGCAGTGGACGG TGCGTTTTGCCCTTGATAGCCAGGTGAAAAAGCATTTTGATCTGGCCAATGTTCGCGCGCCGGTGCAAACGTATCAGGTT CTGCCCGCCCCCGCCGGCGGCCCGCCGCCTGATTCACTGCCGCCGCGCGAACCGACGATTTAG
Upstream 100 bases:
>100_bases CTGCGGCAGGAAGGGCATCATGGAATAGTCCCATTTCATTTTCCCTCCCCTGCGCCATCTATACTTAGTGTTTTGCGTCT CTTTTCTCACTGGAGGAGTC
Downstream 100 bases:
>100_bases CGTTTACGGGTGATAAAACGGCGACGCTGGTCGTCATCCATAAAGGTCCAGGCGATAAAGCGGCTTTGCTTTTGCTCCTG GGCCATCTCTTTTTTCACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 740; Mature: 740
Protein sequence:
>740_residues MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASRNELIAQLREASTTPPTEPAP ALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPYKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIAGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEIT QHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTI TLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT ILASLIENRLASDIHSRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDI ITGVFIQFENGMNTGDLVTIGPLMGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKA NQALKDAVTALMETEDIRGLIIGEPTFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV LPAPAGGPPPDSLPPREPTI
Sequences:
>Translated_740_residues MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASRNELIAQLREASTTPPTEPAP ALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPYKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIAGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEIT QHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTI TLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT ILASLIENRLASDIHSRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDI ITGVFIQFENGMNTGDLVTIGPLMGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKA NQALKDAVTALMETEDIRGLIIGEPTFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV LPAPAGGPPPDSLPPREPTI >Mature_740_residues MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASRNELIAQLREASTTPPTEPAP ALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPYKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIAGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEIT QHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTI TLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT ILASLIENRLASDIHSRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDI ITGVFIQFENGMNTGDLVTIGPLMGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKA NQALKDAVTALMETEDIRGLIIGEPTFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV LPAPAGGPPPDSLPPREPTI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI87081787, Length=742, Percent_Identity=85.5795148247978, Blast_Score=1247, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 81624; Mature: 81624
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: PS01246 UPF0003
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASR CHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH NELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNIT HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DAPYKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPLYRKMGLWARKKNRERSNWLQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH LPAMIAGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAI HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH MLCITIWALYLIFKNKAEITQHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFS HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTITLSPHTQRNYPELQKRLNGW HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ILASLIENRLASDIHSRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLA HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLMGTVERMSIRSVGVRQD CCCHHHHHHHCCCHHHHHHHHHHHEEEECCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCC TGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVTALMETEDIRGL CCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE IIGEPTFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV EECCCHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEE LPAPAGGPPPDSLPPREPTI ECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASR CHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH NELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNIT HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DAPYKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPLYRKMGLWARKKNRERSNWLQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH LPAMIAGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYGLIVAVPIISNQVNVQVGAMANVAI HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH MLCITIWALYLIFKNKAEITQHLLSLAERSLAFFSLFIRAFALVWHWLASAYFIVLFFFS HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFDPGNSLKFMMGATVRSLAIIGIAAFISGMFTRWIAKTITLSPHTQRNYPELQKRLNGW HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LSSALKVARFLTVCVAVMLLLNAWGLFDFWHWLHYGAGEKMVDILIRIALILFFSAVGWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ILASLIENRLASDIHSRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLA HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH GAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLMGTVERMSIRSVGVRQD CCCHHHHHHHCCCHHHHHHHHHHHEEEECCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCC TGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVTALMETEDIRGL CCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE IIGEPTFAGIVGLTNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQV EECCCHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEE LPAPAGGPPPDSLPPREPTI ECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]