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The map label for this gene is ybiF [H]

Identifier: 29142477

GI number: 29142477

Start: 2118098

End: 2118985

Strand: Direct

Name: ybiF [H]

Synonym: t2056

Alternate gene names: 29142477

Gene position: 2118098-2118985 (Clockwise)

Preceding gene: 29142474

Following gene: 29142478

Centisome position: 44.2

GC content: 55.29

Gene sequence:

>888_bases
ATGCCGGGGTCAACACGTAAACTACCAGTCTGGTTGCCCATTTTGGTTTTGCTCATTGCCATGTCCTCTATTCAGAGTGG
CGCTTCACTGGCAAAATCGTTATTTCCTCTTGTTGGCGCGCCGGGTGTAACGGCGCTTCGTCTGGCGTTGGGAACGCTTA
TCCTTATCGCCTTTTTCAAACCCTGGCGTTTGCGTTTTGCCAAAGAGCAGCGGCTGCCTTTACTGTTTTATGGTCTGTCG
CTGGGCGGGATGAACTATCTATTCTATCTGTCGATTCAGACGGTGCCGTTGGGTATTGCGGTCGCGCTGGAATTTACCGG
CCCTCTGGCGGTCGCGCTGTTTTCATCCCGGCGTCCGGTAGATTTTATTTGGGTCGTACTGGCTGTGCTTGGACTCTGGT
TCCTGCTGCCATTAGGACAAGATATGTCTCACGTCGATCTTACCGGGGCCGCGTTAGCGCTCGGCGCTGGCGCCTGTTGG
GCTGTCTATATTCTTACCGGCCAGCGAGCAGGCGCGGAACATGGTCCGGCCACGGTGGCGGTAGGCTCGCTGATTACCGC
CATCATTTTCGTGCCGATTGGCGCAGTTCAGGCTGGCGATGCGCTATGGCACTGGTCGATTCTTCCCTTAGGGTTAGCGG
TCGCTGTGCTTTCTACGGCGCTGCCTTATTCACTGGAAATGATTGCGCTGACGCGCCTGCCAACTCGCACCTTCGGTACG
CTGATGAGCATGGAACCCGTGCTGGCCGCCATTTCCGGGATGATTTTTCTGGGCGAAACGCTTACGGGCATACAAATCCT
GGCCCTGTGCGCCATCATTGCCGCCTCAATGGGTTCTACCCTAACGATTCGCCGCGAACCGCAAATTAAACAAGTTGACG
TAAAATAG

Upstream 100 bases:

>100_bases
ATCCTGGAAATTTTTTTTTCAACGAATCCTCAACCGCTCCGGGGAATTTCCATTACACTGCCACCTTTACTCGTACTGAC
ATTTTTTGACAGGAGAAAGG

Downstream 100 bases:

>100_bases
TTTCTTATTCTGCATGATGTGCATAATCATGCAGAATATCACCTCGTTATTCACCTTTTATTATCGCGCTATTACTTCGT
CATTTTTTGTCATATTTTTT

Product: threonine and homoserine efflux system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MPGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGLS
LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACW
AVYILTGQRAGAEHGPATVAVGSLITAIIFVPIGAVQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGT
LMSMEPVLAAISGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVDVK

Sequences:

>Translated_295_residues
MPGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGLS
LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACW
AVYILTGQRAGAEHGPATVAVGSLITAIIFVPIGAVQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGT
LMSMEPVLAAISGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVDVK
>Mature_294_residues
PGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGLSL
GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACWA
VYILTGQRAGAEHGPATVAVGSLITAIIFVPIGAVQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGTL
MSMEPVLAAISGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVDVK

Specific function: Unknown

COG id: COG5006

COG function: function code R; Predicted permease, DMT superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787033, Length=295, Percent_Identity=88.4745762711865, Blast_Score=525, Evalue=1e-150,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31300; Mature: 31169

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
PWRLRFAKEQRLPLLFYGLSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPV
HHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEECEEEEEEEEECCCEEEEHHCCCCCH
DFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACWAVYILTGQRAGAEHGPATVA
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHH
VGSLITAIIFVPIGAVQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGT
HHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
LMSMEPVLAAISGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVDVK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure 
PGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAFFK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
PWRLRFAKEQRLPLLFYGLSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPV
HHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEECEEEEEEEEECCCEEEEHHCCCCCH
DFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACWAVYILTGQRAGAEHGPATVA
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHH
VGSLITAIIFVPIGAVQAGDALWHWSILPLGLAVAVLSTALPYSLEMIALTRLPTRTFGT
HHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
LMSMEPVLAAISGMIFLGETLTGIQILALCAIIAASMGSTLTIRREPQIKQVDVK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609; 8930920 [H]