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The map label for this gene is yccA [H]

Identifier: 29142263

GI number: 29142263

Start: 1896140

End: 1896799

Strand: Direct

Name: yccA [H]

Synonym: t1834

Alternate gene names: 29142263

Gene position: 1896140-1896799 (Clockwise)

Preceding gene: 29142261

Following gene: 29142264

Centisome position: 39.57

GC content: 52.88

Gene sequence:

>660_bases
ATGGATCGTATCATTACATCATCGCGTGATCGTAGCTCGCTACTGAGTACGCACAAAGTACTGCGCAACACCTATTTTCT
GTTGAGCCTGACGCTGGCTTTCTCCGCAATTACCGCGACAGCCAGTACGGTACTGATGCTGCCCTCCCCCGGCCTGATTC
TGACGCTGGTCGGTATGTATGGGCTGATGTTCCTGACCTATAAAACCGCCAATAAGCCGGTCGGTATCCTGTCTGCTTTT
GCGTTTACCGGCTTCCTCGGCTATATCCTGGGCCCGATTCTTAACGCCTATCTGTCAGCAGGCATGGGCGATGTGATTGG
CCTGGCGCTGGGTGGTACCGCGTTAGTATTTTTCTGCTGCTCCGCTTACGTTCTGACCACCCGTAAGGATATGTCTTTCC
TGGGCGGTATGCTAATGGCCGGGATCGTCGTCGTGCTGATTGGTATGGTGGCGAATATTTTCCTGCAACTGCCTGCATTG
CACCTGGCGATTAGCGCGGTGTTTATCCTGATTTCCTCGGGCGCTATCCTGTATGAAACCAGTAACATCATTCACGGCGG
TGAAACCAACTATATTCGTGCGACCGTCAGTCTGTACGTTTCGCTGTACAACATCTTTGTCAGCCTGCTCAGCATTCTGG
GCTTCGCCAGCCGCGACTAA

Upstream 100 bases:

>100_bases
AACGTAAACGAATGCGTAAAGATGGGTAAAACCACTGGGTGACAGTGACTGTTTTTATTATTCTCCTTTATTAATTACAT
CTGTCATAAGAGAGTGACTA

Downstream 100 bases:

>100_bases
TCGACATTCCCCTCTTCCAGCCCTGCTTATGCAGGGCTTTATTTTTTGCTACACTGCCGTCCGTGTTGATTACGCAGTGA
AACGTTATGTTGATCTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPVGILSAF
AFTGFLGYILGPILNAYLSAGMGDVIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
HLAISAVFILISSGAILYETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD

Sequences:

>Translated_219_residues
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPVGILSAF
AFTGFLGYILGPILNAYLSAGMGDVIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
HLAISAVFILISSGAILYETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
>Mature_219_residues
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPVGILSAF
AFTGFLGYILGPILNAYLSAGMGDVIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
HLAISAVFILISSGAILYETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Escherichia coli, GI1787205, Length=219, Percent_Identity=95.4337899543379, Blast_Score=411, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006213
- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 23348; Mature: 23348

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS01243 BI1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
GLMFLTYKTANKPVGILSAFAFTGFLGYILGPILNAYLSAGMGDVIGLALGGTALVFFCC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILYET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
SNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
GLMFLTYKTANKPVGILSAFAFTGFLGYILGPILNAYLSAGMGDVIGLALGGTALVFFCC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILYET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
SNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]