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The map label for this gene is ydhB [H]

Identifier: 29141756

GI number: 29141756

Start: 1361396

End: 1362328

Strand: Direct

Name: ydhB [H]

Synonym: t1297

Alternate gene names: 29141756

Gene position: 1361396-1362328 (Clockwise)

Preceding gene: 29141753

Following gene: 29141760

Centisome position: 28.41

GC content: 56.81

Gene sequence:

>933_bases
ATGTGGTCGGAATACTCGCTTGAAGTGGTTGACGCCGTGGCGCGCAATGGCAGTTTTAGCGCGGCGGCGCAAGAACTGCA
CCGTGTGCCTTCAGCAGTCAGTTACACCGTTCGTCAGTTAGAGGAGTGGCTGGCCGTACCGCTTTTTGTACGACGTCACC
GTGATGTTGAACTAACGCCTGCTGGCGTCTGGTTTTTAAAAGAAGGGCGTTCTGTTATCAAAAAAATGCAGATCACTCGC
CAACAGTGTCAGCAAATTGCTAATGGCTGGCGCGGGCAGTTAGCTATTGCGGTGGACAATATCGTCAGACCAGAACGTAC
CCGGCAGATGATCGTCGATTTTTATCGTCATTTTGACGATGTGGAACTGCTGGTTTTTCAGGAGGTGTTTAACGGCGTCT
GGGACGCGCTCTCCGACGGGCGTGTCGAACTGGCGATTGGGGCGACGCAGGCGATTCCGGTAGGGGGGCGTTACGCTTTT
CGGGATATGGGGACCCTGAGCTGGAGCTGCGTAGTGGCAAGCGATCACCCGCTGGCGTCGATGCCTGGGCCGTTAAGCGA
TGATACCCTGCGCAACTGGCCGTCGCTGGTCAGGGAAGACACTTCGCGAACCTTACCGAAACGGATTACCTGGTTGCTGG
ATAACCAAAAAAGGGTCGTCGTACCGGACTGGGAGTCATCGGCAACCTGCCTGTCGGCAGGACTATGCGTGGGAATGGTG
CCGACGCATTTTGCCCGACAGTGGATAGACAGCGGAAAATGGGTGGCGCTGACGTTAGAGAATCCGTTTCCCGATGCGGC
CTGTTGCGTGACGTGGCAGCAAAACGAGGCCTCGCCCGCGCTGGCATGGCTGCTGGACTATTTGGGCGATAGCGAAACGT
TGAATCGGGAGTGGCTGCGGGAGCCAGAAGAGGCTCCCGACAGCGGGGATTAA

Upstream 100 bases:

>100_bases
TTCTTATCAGACAGACATTGTCGCAGAGTGTAGGGAGTGAAATTACGGTTGTGAAACGTTAATATTTGTCCAGTGAATTC
AAAATTTTTGTAGGCAAATT

Downstream 100 bases:

>100_bases
CGCCGATAGTCGCGGAACGGGCCGTCAGCGACCGAGCGACGCTCAACCAGGCGTGGATGAACTTCAATAGACTGTGACTC
TTCACGCTTATTGACGATGC

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFVRRHRDVELTPAGVWFLKEGRSVIKKMQITR
QQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYAF
RDMGTLSWSCVVASDHPLASMPGPLSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCLSAGLCVGMV
PTHFARQWIDSGKWVALTLENPFPDAACCVTWQQNEASPALAWLLDYLGDSETLNREWLREPEEAPDSGD

Sequences:

>Translated_310_residues
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFVRRHRDVELTPAGVWFLKEGRSVIKKMQITR
QQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYAF
RDMGTLSWSCVVASDHPLASMPGPLSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCLSAGLCVGMV
PTHFARQWIDSGKWVALTLENPFPDAACCVTWQQNEASPALAWLLDYLGDSETLNREWLREPEEAPDSGD
>Mature_310_residues
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFVRRHRDVELTPAGVWFLKEGRSVIKKMQITR
QQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYAF
RDMGTLSWSCVVASDHPLASMPGPLSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCLSAGLCVGMV
PTHFARQWIDSGKWVALTLENPFPDAACCVTWQQNEASPALAWLLDYLGDSETLNREWLREPEEAPDSGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=310, Percent_Identity=90.9677419354839, Blast_Score=589, Evalue=1e-169,
Organism=Escherichia coli, GI1786508, Length=285, Percent_Identity=30.1754385964912, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1786713, Length=275, Percent_Identity=30.9090909090909, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI87082024, Length=282, Percent_Identity=31.2056737588652, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI1789492, Length=280, Percent_Identity=31.4285714285714, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI157672245, Length=169, Percent_Identity=34.3195266272189, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789506, Length=145, Percent_Identity=26.8965517241379, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790262, Length=192, Percent_Identity=27.0833333333333, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788706, Length=132, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35014; Mature: 35014

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFVRRHRDVELTP
CCCCHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
AGVWFLKEGRSVIKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHCCCC
VELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYAFRDMGTLSWSCVVASDHPLAS
HHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCHHHHCCCCEEEEEEECCCCCCC
MPGPLSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCLSAGLCVGMV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCHHHHHHHHHHHHH
PTHFARQWIDSGKWVALTLENPFPDAACCVTWQQNEASPALAWLLDYLGDSETLNREWLR
HHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHC
EPEEAPDSGD
CCCCCCCCCC
>Mature Secondary Structure
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFVRRHRDVELTP
CCCCHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
AGVWFLKEGRSVIKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHCCCC
VELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYAFRDMGTLSWSCVVASDHPLAS
HHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCHHHHCCCCEEEEEEECCCCCCC
MPGPLSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCLSAGLCVGMV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCHHHHHHHHHHHHH
PTHFARQWIDSGKWVALTLENPFPDAACCVTWQQNEASPALAWLLDYLGDSETLNREWLR
HHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHC
EPEEAPDSGD
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]