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The map label for this gene is ssaU [H]

Identifier: 29141751

GI number: 29141751

Start: 1354837

End: 1355895

Strand: Direct

Name: ssaU [H]

Synonym: t1290

Alternate gene names: 29141751

Gene position: 1354837-1355895 (Clockwise)

Preceding gene: 29141750

Following gene: 29141753

Centisome position: 28.27

GC content: 39.66

Gene sequence:

>1059_bases
ATGAGCGAGAAAACAGAACAGCCTACAGAAAAGAAATTACGTGATGGCCGTAAGGAAGGGCAGGTTGTCAAAAGTATTGA
AATAACATCATTATTTCAGCTGATTGCGCTTTATTTGTATTTTCATTTCTTTACTGAAAAGATGATTTTGATACTGATTG
AGTCAATAACGTTCACATTACAATTAGTAAATAAACCATTTTCTTATGCACTAACGCAATTGAGTCATGCTTTAATAGAG
TCACTGACTTCTGCACTGCTGTTTCTGGGCGCTGGGGTAATAGTTGCTACTGTGGGTAGCGTGTTTCTTCAGGTGGGGGT
GGTTATTGCCAGCAAGGCCATTGGTTTTAAAAGCGAGCATATAAATCCGGTAAGTAATTTTAAGCAGATATTCTCTTTAC
ATAGCGTAGTAGAATTATGTAAATCCAGCCTAAAAGTTATCATGTTATCTCTTATCTTTGCCTTTTTCTTTTATTATTAT
GCCAGTACTTTTCGGGCGCTACCGTACTGTGGGTTAGCCTGTGGCGTGCTTGTGGTTTCTTCTTTAATAAAATGGTTATG
GGTAGGGGTGATGGCTTTTTATATCGTCGTTGGCATACTGGACTATTCTTTTCAATATTATAAGATTAGAAAAGATCTAA
AAATGAGTAAAGATGACGTAAAACAGGAGCATAAAGATCTGGAGGGCGATCCTCAAATGAAGACACGGCGTCGGGAAATG
CAGAGTGAAATACAAAGTGGGAGTTTAGCTCAATCTGTTAAACAATCTGTTGCGGTAGTGCGTAATCCAACGCATATTGC
GGTTTGTCTTGGCTATCATCCCACCGATATGCCAATACCACGCGTCCTGGAAAAAGGCAGTGATGCTCAAGCTAACTATA
TTGTTAACATCGCTGAACGCAACTGCATCCCCGTTGTTGAAAATGTTGAGCTGGCCCGCTCATTATTTTTTGAAGTGGAA
CGCGGAGATAAAATTCCTGAAACGTTATTTGAACCCGTTGCAGCCTTGTTACGTATGGTGATGAAGATAGATTATGCGCA
TTCTACCGAAACACCATAA

Upstream 100 bases:

>100_bases
TTCTACTAACGCTCCTGATCTCATTCCCTTATGCTCTTCATCACTATTTGGTTGAAAGCGATAAGTTTTATATTTATCTA
AAAGACTGGTTTCCATCTGT

Downstream 100 bases:

>100_bases
ATGCTTTTGGTATGCTTCTTCAGGCCACTGCGAAGGTTAAGAGGGTAATAGCGTATAGAGCAGTGCTTGACGATAAAGGT
GAGAGACTGAAAATAATCGC

Product: secretion system apparatus protein SsaU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQLVNKPFSYALTQLSHALIE
SLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYY
ASTFRALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVE
RGDKIPETLFEPVAALLRMVMKIDYAHSTETP

Sequences:

>Translated_352_residues
MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQLVNKPFSYALTQLSHALIE
SLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYY
ASTFRALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVE
RGDKIPETLFEPVAALLRMVMKIDYAHSTETP
>Mature_351_residues
SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQLVNKPFSYALTQLSHALIES
LTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYA
STFRALPYCGLACGVLVVSSLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ
SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVER
GDKIPETLFEPVAALLRMVMKIDYAHSTETP

Specific function: Part of a type III secretion system [H]

COG id: COG4792

COG function: function code U; Type III secretory pathway, component EscU

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=355, Percent_Identity=29.8591549295775, Blast_Score=146, Evalue=2e-36,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 39733; Mature: 39602

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
CCCCCCCCHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC
INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHH
QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
HHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCHHEEEECCC
NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
CCCCCCCHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]