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The map label for this gene is ssaV [H]

Identifier: 29141743

GI number: 29141743

Start: 1348062

End: 1350107

Strand: Direct

Name: ssaV [H]

Synonym: t1282

Alternate gene names: 29141743

Gene position: 1348062-1350107 (Clockwise)

Preceding gene: 29141742

Following gene: 29141744

Centisome position: 28.13

GC content: 46.04

Gene sequence:

>2046_bases
ATGCGTTCATGGTTAGGTGAGGGAATCAGGGCGCAACAGTGGCTCAGTGTATGCGCGGGTCGTCAGGATATGGTTCTGGC
GACGGTGTTATTAATCGCTATCGTGATGATGCTGTTACCTTTGCCGACCTGGATGGTTGATATCCTGATTACTATCAACC
TTATGTTTTCAGTGATCCTGCTTTTAATTGTTATTTATCTTAGTGACCCTCTCGATTTATCGGTATTTCCGTCTTTATTA
CTTATTACTACATTATATCGTTTGTCACTCACAATCAGCACATCACGGCTGGTACTGTTACAACATAATGCCGGTAATAT
TGTGGATGCTTTCGGTAAGTTTGTCGTAGGAGGAAATCTCACCGTTGGGTTGGTCGTATTTACCATCATTACTATTGTGC
AATTTATTGTCATTACAAAAGGTATCGAGAGGGTGGCGGAAGTTAGCGCACGTTTCTCGCTTGATGGGATGCCAGGCAAA
CAAATGAGTATCGATGGCGATTTGCGTGCCGGAGTTATCGATGCAGACCATGCCCGTACATTAAGACAGCACGTCCAGCA
GGAAAGCCGTTTTCTCGGTGCGATGGACGGTGCAATGAAATTTGTTAAAGGCGATACGATTGCCGGTATTATTGTTGTTC
TGGTGAACATTATCGGCGGTATTATTATCGCTATCGTACAATATGATATGTCGATGAGTGAGGCTGTTCACACTTATAGC
GTACTGTCAATCGGAGATGGTTTATGTGGGCAAATTCCATCGCTGCTGATTTCCCTTAGCGCGGGAATTATTGTCACCCG
TGTTCCGGGTGAGAAACGCCAGAACCTGGCGACAGAGTTGAGTTCTCAAATTGCCAGACAACCTCAGTCGCTCATATTAA
CCGCTGTGGTTTTAATGCTCCTCGCTTTAATTCCTGGCTTTCCTTTTATCACTCTCGCTTTCTTTTCAGCGTTGTTAGCA
TTGCCAATTATCCTCATTCGCCGCAAAAAGTCTGTGGTTTCCGCAAATGGCATCGAAGCGCCGGAAAAAGATAGTATGGT
TCCCGGCGCATGTCCTCTAATCTTACGTCTTACCCCGACGTTACATTCTGCCGACCTGATTCGTGATATTGATGCCATGA
GATGGTTTTTATTTGAGGATACCGGCGTCCCTCTCCCTGAGGTGAATATTGAGGTTTTGCCTGAACCCACCGAAAAATTG
ACGGTACTGCTATATCAGGAACCCGTGTTTAGTTTATCTATTCCCGCCCAGGCGGATTATTTATTGATAGGCGCGGACGC
TAGTGTGGTGGGTGACAGCCAGACGTTACCGAACGGAATGGGGCAGATCTGTTGGCTTTCAAAAGACATGGCTCATAAGG
CGCAAGGTTTTGGACTGGACGTTTTCGCGGGCAGCCAACGTATCTCTGCCTTATTAAAATGTGTCCTGCTTCGGCATATG
GGAGAGTTTATTGGTGTTCAGGAAACGCGTTATCTAATGAATGCGATGGAAAAAAACTACTCTGAACTGGTGAAAGAACT
TCAGCGCCAGTTACCCATTAATAAAATCGCTGAAACTTTGCAACGGCTTGTATCAGAGCGGGTTTCTATTAGAGATTTAC
GTCTTATTTTTGGCACATTAATTGACTGGGCGCCACGCGAAAAAGATGTCCTGATGTTGACAGAATATGTCCGTATCGCG
CTTCGCCGTCATATTCTGCGTCGTCTTAATCCGGAAGGAAAACCGCTGCCGATTTTGCGGATCGGCGAAGGTATTGAAAA
CCTCGTGCGTGAATCCATTCGCCAGACGGCAATGGGGACCTATACTGCGCTGTCGTCTCGTCATAAGACGCAGATCCTGC
AACTTATTGAGCAGGCGCTGAAGCAGTCAGCCAAATTATTCATTGTCACTTCTGTCGACACCCGCCGTTTCTTGCGAAAA
ATTACAGAAGCCACCTTGTTCGACGTACCGATTTTGTCATGGCAGGAATTAGGAGAGGAGAGCCTTATACAAGTGGTAGA
AAGTATTGACCTTAGCGAAGAGGAGTTGGCGGACAATGAAGAATGA

Upstream 100 bases:

>100_bases
TGCGCGATGGGCTTGCAATGAGTTGTTCTCCACCTCTTTCCAGCTCCGCCGAGCTCTGGTTACGATTACATCATCGACAA
ATAAAATTTCTGGAGTCGCA

Downstream 100 bases:

>100_bases
ATTGATGCAACGTCTGAGGCTGAAATATCCGCCCCCCGATGGTTATTGTCGATGGGGCCGAATTCAAGATGTCAGCGCAA
CGTTGTTAAATGCGTGGTTG

Product: secretion system apparatus protein SsaV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 681; Mature: 681

Protein sequence:

>681_residues
MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIVIYLSDPLDLSVFPSLL
LITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGK
QMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLA
LPIILIRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKL
TVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIA
LRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRK
ITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE

Sequences:

>Translated_681_residues
MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIVIYLSDPLDLSVFPSLL
LITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGK
QMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLA
LPIILIRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKL
TVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIA
LRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRK
ITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE
>Mature_681_residues
MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIVIYLSDPLDLSVFPSLL
LITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGK
QMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLA
LPIILIRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKL
TVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIA
LRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRK
ITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE

Specific function: Required For Formation Of The Rod Structure Of The Flagellar Apparatus. Together With Flii And Flih, May Constitute The Export Apparatus Of Flagellin. [C]

COG id: COG4789

COG function: function code U; Type III secretory pathway, component EscV

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family [H]

Homologues:

Organism=Escherichia coli, GI1788187, Length=686, Percent_Identity=32.5072886297376, Blast_Score=328, Evalue=6e-91,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001712
- InterPro:   IPR006302 [H]

Pfam domain/function: PF00771 FHIPEP [H]

EC number: NA

Molecular weight: Translated: 75379; Mature: 75379

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00994 FHIPEP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LLIVIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCEEEEEECCCCCHHHHHHCEEECCCC
TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCHHHHH
LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
HHHHCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPT
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCC
LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
HHHHHHHHHHHHHHHHHEECCCCCCCCCCEEECCCCHHHEEEEEEECCCEEEECCCCCCE
LLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
EEEECCCCCCCCCCCCCCCCCCCEECCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHH
GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHCCHH
SLIQVVESIDLSEEELADNEE
HHHHHHHHCCCCHHHHCCCCC
>Mature Secondary Structure
MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LLIVIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCEEEEEECCCCCHHHHHHCEEECCCC
TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCHHHHH
LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
HHHHCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPT
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCC
LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
HHHHHHHHHHHHHHHHHEECCCCCCCCCCEEECCCCHHHEEEEEEECCCEEEECCCCCCE
LLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
EEEECCCCCCCCCCCCCCCCCCCEECCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHH
GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHCCHH
SLIQVVESIDLSEEELADNEE
HHHHHHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]