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The map label for this gene is ssrB [H]

Identifier: 29141720

GI number: 29141720

Start: 1330634

End: 1331272

Strand: Reverse

Name: ssrB [H]

Synonym: t1259

Alternate gene names: 29141720

Gene position: 1331272-1330634 (Counterclockwise)

Preceding gene: 29141721

Following gene: 29141719

Centisome position: 27.78

GC content: 40.22

Gene sequence:

>639_bases
ATGAAAGAATATAAGATCTTATTAGTAGACGATCATGAAATCATCATTAACGGCATTATGAATGCCTTATTACCCTGGCC
TCATTTTAAAATTGTAGAGCATGTTAAAAATGGTCTTGAGGTTTATAATGCCTGTTGCGCATACGAGCCTGACATACTTA
TCCTTGATCTTAGCTTACCTGGCATCAATGGCCTGGATATCATTCCTCAATTACATCAGCGTTGGCCAGCAATGAATATT
CTGGTTTACACAGCATACCAACAAGAGTATATGACCATTAAAACTTTAGCCGCAGGTGCTAATGGCTATGTTTTAAAAAG
CAGTAGTCAGCAAGTCCTGTTAGCGGCATTGCAAACAGTCGCAGTAAACAAGCGTTACATTGACCCGACGTTGAATCGGG
AAGCTATCCTGGCTGAATTAAACGCTGACACGACCAATCATCAACTGCTTACTTTGCGCGAGCGTCAGGTTCTTAAACTT
ATTGACGAGGGGTATACCAATCATGGGATCAGCGAAAAGCTACATATCAGTATAAAAACCGTCGAAACACATCGGATGAA
TATGATGAGAAAGCTACAGGTTCATAAAGTGACAGAGTTACTTAACTGCGCCCGAAGAATGAGGTTAATAGAGTATTAA

Upstream 100 bases:

>100_bases
CGCGCTGGAAGAACTAACCGACTTACGCCAGAAAATACGTATGATCTTCAAAAACTACACCATTACTTAATATTATCTTA
ATTTTCGCGAGGGCAGCAAA

Downstream 100 bases:

>100_bases
CCAGGGGCATCCGATGGTATTAAGCATTGGTCATATTTTGATGAGCCTTACGCCACGCAGTATTGCTCATCATCGACAAA
ATCCATACGGATGCCCTGGT

Product: two-component response regulator

Products: NA

Alternate protein names: Nitrogen regulation protein C [H]

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLPGINGLDIIPQLHQRWPAMNI
LVYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELNADTTNHQLLTLRERQVLKL
IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLIEY

Sequences:

>Translated_212_residues
MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLPGINGLDIIPQLHQRWPAMNI
LVYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELNADTTNHQLLTLRERQVLKL
IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLIEY
>Mature_212_residues
MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLPGINGLDIIPQLHQRWPAMNI
LVYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELNADTTNHQLLTLRERQVLKL
IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLIEY

Specific function: Member of the two-component regulatory system nreB/nreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. Phosphorylated nreC binds to a GC-rich palindromic sequence at the promoters of the nitrate (narGHJI) and nit

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=203, Percent_Identity=30.5418719211823, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1788712, Length=203, Percent_Identity=29.064039408867, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1790102, Length=202, Percent_Identity=31.1881188118812, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788521, Length=196, Percent_Identity=29.0816326530612, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787473, Length=183, Percent_Identity=32.7868852459016, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788546, Length=205, Percent_Identity=27.3170731707317, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786747, Length=214, Percent_Identity=27.1028037383178, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24355; Mature: 24355

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLP
CCCEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
GINGLDIIPQLHQRWPAMNILVYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQTV
CCCCCHHHHHHHHHCCCCEEEEEEECHHHHHEEEHHHCCCCCEEEECCCHHHHHHHHHHH
AVNKRYIDPTLNREAILAELNADTTNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKT
HHCCEECCCCCCHHHEEEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCEEEEEEEE
VETHRMNMMRKLQVHKVTELLNCARRMRLIEY
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLP
CCCEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
GINGLDIIPQLHQRWPAMNILVYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQTV
CCCCCHHHHHHHHHCCCCEEEEEEECHHHHHEEEHHHCCCCCEEEECCCHHHHHHHHHHH
AVNKRYIDPTLNREAILAELNADTTNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKT
HHCCEECCCCCCHHHEEEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCEEEEEEEE
VETHRMNMMRKLQVHKVTELLNCARRMRLIEY
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12426351 [H]