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The map label for this gene is yecD [H]

Identifier: 29141456

GI number: 29141456

Start: 1063748

End: 1064314

Strand: Reverse

Name: yecD [H]

Synonym: t0975

Alternate gene names: 29141456

Gene position: 1064314-1063748 (Counterclockwise)

Preceding gene: 29141461

Following gene: 29141455

Centisome position: 22.21

GC content: 56.08

Gene sequence:

>567_bases
ATGCTGAAACTCAACGCGACCACAACCGCCCTGGTGGTTATTGATTTACAGGAAGGAATTCTTCCGTTTGCCGGCGGCCC
GTATACGGCAAATGAGGTGGTCGCCCGCGCCGCGCGGCTGGCGGAAAAGTGTCGCGCCAACGGCTCGCCCGTGGTTATGG
TACGCGTTGGATGGTCTGATGATTATGCCGAAGCGTTAAAACAGCCGGTGGATGCCGCAACGCCTGCGCACGCGTTGCCG
GAAAACTGGTGGACCTGGCCTACGGCATTGGGTAAAAAGGACAGCGATCTGGAAGTGACTAAACGCCAGTGGGGCGCGTT
TTACGGCACCGACCTGGAATTACAGCTTCGCCGCCGGGGTATCGACACCATCATATTGTGCGGAATCTCAACCAATATCG
GCGTCGAATCCACAGCGCGTAACGCCTGGGAGTTGGGATTTAACCTTATTATTGCCGAAGATGCCTGTAGCGCCGCCAGC
AGTGAGCAGCATCAGAGCAGTATGACGCATATTTTCCCGCGCATTGGCCGGGTACGCAGCGTAGAGGATATTTTAAACGC
CTTATGA

Upstream 100 bases:

>100_bases
TTGCGTATGCTCACAAAAATTAACAATATTTGTCGCCGCTTTCCTCTTTAATCGCGCTTAAGGTGTAGTGAAATCCGCTA
TTTTTAGGAGAGTGATTATC

Downstream 100 bases:

>100_bases
TCTACATTGGCTTGCCGCAATGGTCGCACCCGAAATGGGCGCGGCTCGGCATCACCAGTCTGGAAGAGTATGCCCGCCAC
TTTAACTGCGTGGAGGGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MLKLNATTTALVVIDLQEGILPFAGGPYTANEVVARAARLAEKCRANGSPVVMVRVGWSDDYAEALKQPVDAATPAHALP
ENWWTWPTALGKKDSDLEVTKRQWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLIIAEDACSAAS
SEQHQSSMTHIFPRIGRVRSVEDILNAL

Sequences:

>Translated_188_residues
MLKLNATTTALVVIDLQEGILPFAGGPYTANEVVARAARLAEKCRANGSPVVMVRVGWSDDYAEALKQPVDAATPAHALP
ENWWTWPTALGKKDSDLEVTKRQWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLIIAEDACSAAS
SEQHQSSMTHIFPRIGRVRSVEDILNAL
>Mature_188_residues
MLKLNATTTALVVIDLQEGILPFAGGPYTANEVVARAARLAEKCRANGSPVVMVRVGWSDDYAEALKQPVDAATPAHALP
ENWWTWPTALGKKDSDLEVTKRQWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLIIAEDACSAAS
SEQHQSSMTHIFPRIGRVRSVEDILNAL

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=188, Percent_Identity=80.8510638297872, Blast_Score=320, Evalue=4e-89,
Organism=Escherichia coli, GI87081820, Length=214, Percent_Identity=27.1028037383178, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 20534; Mature: 20534

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLNATTTALVVIDLQEGILPFAGGPYTANEVVARAARLAEKCRANGSPVVMVRVGWSD
CEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCH
DYAEALKQPVDAATPAHALPENWWTWPTALGKKDSDLEVTKRQWGAFYGTDLELQLRRRG
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHCCCCCCCCCEEHHHHCC
IDTIILCGISTNIGVESTARNAWELGFNLIIAEDACSAASSEQHQSSMTHIFPRIGRVRS
CCEEEEEECCCCCCCCHHCCHHHHCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHCCCCC
VEDILNAL
HHHHHHCC
>Mature Secondary Structure
MLKLNATTTALVVIDLQEGILPFAGGPYTANEVVARAARLAEKCRANGSPVVMVRVGWSD
CEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCH
DYAEALKQPVDAATPAHALPENWWTWPTALGKKDSDLEVTKRQWGAFYGTDLELQLRRRG
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHCCCCCCCCCEEHHHHCC
IDTIILCGISTNIGVESTARNAWELGFNLIIAEDACSAASSEQHQSSMTHIFPRIGRVRS
CCEEEEEECCCCCCCCHHCCHHHHCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHCCCCC
VEDILNAL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]