Click here to switch to the map view.

The map label for this gene is cspB

Identifier: 29141370

GI number: 29141370

Start: 983453

End: 983665

Strand: Direct

Name: cspB

Synonym: t0882

Alternate gene names: 29141370

Gene position: 983453-983665 (Clockwise)

Preceding gene: 29141369

Following gene: 29141372

Centisome position: 20.52

GC content: 42.72

Gene sequence:

>213_bases
ATGACGACGAAAATCACTGGTTTAGTAAAATGGTTTAACCCTGAAAAGGGCTTTGGTTTCATTACGCCTAAAGATGGCAG
CAAAGATGTGTTTGTGCATTTTTCCGCCATTCAAAGTAATGAATTCCGCACTCTGAATGAAAATCAGGAAGTGGAGTTTT
CAGCAGAGCAGGGACCAAAAGGTCCATCAGCGGTCAACGTTGTGGCGCTTTAA

Upstream 100 bases:

>100_bases
CATCATTTGTTCCTCTTGAGATCTCCTTTAGGTTTTTTTCTCTCTGATAATTTTCTTCAGGCCATTTCGCCCAAGGGCTC
ATTCAAAAGGTAACAATATT

Downstream 100 bases:

>100_bases
GGCAACTGATATTACTAATAAAATTCACTTCCGGTGTCCATGTTGCCATGGTTCACAATACAGAACATCGACATTCGATG
TTACTGAGCAAAACCCGTTT

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPKGPSAVNVVAL

Sequences:

>Translated_70_residues
MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPKGPSAVNVVAL
>Mature_69_residues
TTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPKGPSAVNVVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=84.2857142857143, Blast_Score=125, Evalue=5e-31,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=80, Blast_Score=121, Evalue=8e-30,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=69.1176470588235, Blast_Score=103, Evalue=2e-24,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=64.2857142857143, Blast_Score=102, Evalue=5e-24,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=72.0588235294118, Blast_Score=101, Evalue=7e-24,
Organism=Escherichia coli, GI1788126, Length=68, Percent_Identity=70.5882352941177, Blast_Score=100, Evalue=3e-23,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=53.2258064516129, Blast_Score=75, Evalue=9e-16,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=44.7761194029851, Blast_Score=60, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSPJ_SALTI (P58726)

Other databases:

- EMBL:   AL627272
- EMBL:   AE014613
- RefSeq:   NP_456555.1
- RefSeq:   NP_804712.1
- ProteinModelPortal:   P58726
- SMR:   P58726
- GeneID:   1070163
- GeneID:   1248544
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t0882
- KEGG:   sty:STY2204
- HOGENOM:   HBG717773
- OMA:   ASESVHI
- ProtClustDB:   CLSK894240
- BioCyc:   SENT209261:T0882-MONOMER
- BioCyc:   SENT220341:STY2204-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7717; Mature: 7586

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPK
CCCCCEEEEEEECCCCCCEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEECCCCCC
GPSAVNVVAL
CCCEEEEEEC
>Mature Secondary Structure 
TTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPK
CCCCEEEEEEECCCCCCEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEECCCCCC
GPSAVNVVAL
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504