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The map label for this gene is pduS [H]

Identifier: 29141319

GI number: 29141319

Start: 917063

End: 918391

Strand: Reverse

Name: pduS [H]

Synonym: t0821

Alternate gene names: 29141319

Gene position: 918391-917063 (Counterclockwise)

Preceding gene: 29141320

Following gene: 29141318

Centisome position: 19.17

GC content: 61.78

Gene sequence:

>1329_bases
ATGTCCCTTAGCGCCGATGAAATTCGTGAGCGCGTTCGCGCAGCGGGCGTTGTCGGTGCGGGCGGCGCAGGTTTTCCCGC
CCACGTTAAGCTACAGGCGCAGGTAGAGATTTTTCTGGTGAACGCCGCCGAGTGTGAACCGATGCTCAAAGTTGACCAGC
AACTGATGTGGCAGCAGGCCGCGCGTCTTGTCCGCGGCGTGCAGTACGCCATGACGGCAACCGGCGCGCGCGAAGGGGTG
ATTGCCCTGAAAGAAAAATACCGCCGGGCCATCGACGCCCTCTCCCCACTACTGCCAGCCGGTATCCGCCTGCATATCCT
GCCGGATGTATATCCCGCGGGCGATGAGGTGCTGACTATCTGGATGGCAACCGGTCGTCGGGTCGCCCCTGCCGCGCTGC
CTGCCAGCGTCGGCGTAGTCGTCAATAACGTGCAAACGGTGCTGAATATTGCCCGGGCGGTCGAGCAGCAGTTTCCGGTC
ACTCGTCGCACGTTGACCGTGAACGGCGCGGTCGCCAGACCGTTGACCGTTACCGTTCCTGTCGGCATGTCACTGCATGA
AGTGCTGGCGCTGGCTGGCGGCGCGACGGTCGACAACCCCGGTTTTATTAACGGCGGCCCGATGATGGGTGGCCTGATTA
CCTCTCTTGATAACCCGGTGACGAAAACTACCGGCGGCCTGCTGGTGCTCCCAAAAAGCCATCCGCTTATCCAGCGCAGG
ATGCAGGACGAGCGCACAGTGCTTTCCGTCGCGCGCACCGTCTGCGAACAGTGCCGACTCTGTACCGATCTCTGCCCACG
ACATCTGATCGGCCACGAACTCTCTCCGCACCTGCTGGTGCGGGCGGTGAACTTTCATCAGGCTGCCACGCCGCAACTGC
TGCTGAGCGCCCTTACCTGCTCGGAATGCAACGTTTGCGAAAGCGTGGCCTGCCCGGTCGGGATCTCGCCGATGCGCATC
AACCGCATGTTAAAACGCGAGCTGCGGGCGCAAAACCAGCGCTACGAAGGGCCGCTGAATCCGGCCGACGAAATGGCGAA
ATATCGCCTGGTGCCGGTGAAGCGGCTGATCGCCAAACTGGGACTAAGCCCCTGGTACCAGGAAGCGCCGCTGGTTGAAG
AAGAGCCGTCAGTAGAAAAAGTCACTTTGCAGCTGCGCCAGCATATTGGTGCCAGCGCAGTACCGACTGTTGCCGTCGGC
GAGCGCGTGACTCGCGGGCAATGCGTTGCCGATGTCCCGCCTGGCGCGCTCGGCGCATCCATTCACGCCAGCATCGACGG
CATTGTTTCGGCCATCAGCGAACAGGCCATCACTGTTGTAAGAGGTTAA

Upstream 100 bases:

>100_bases
CGGATGTCACGTTGCGCACCAACCCGCGCCCGGCCAGCGCCGAGGAAATTCGTGAACTGCTGGAGGAACTGCTATGAGCG
CCGCCATCAACAGCGTTTAA

Downstream 100 bases:

>100_bases
CCATGTCTCAGGCTATAGGAATTTTAGAACTCACCAGCATCGCCAAAGGCATGGAGCTTGGTGATGCCATGCTGAAAAGC
GCCAACGTCGATCTACTGGT

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGV
IALKEKYRRAIDALSPLLPAGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQQFPV
TRRTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDNPGFINGGPMMGGLITSLDNPVTKTTGGLLVLPKSHPLIQRR
MQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATPQLLLSALTCSECNVCESVACPVGISPMRI
NRMLKRELRAQNQRYEGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGASAVPTVAVG
ERVTRGQCVADVPPGALGASIHASIDGIVSAISEQAITVVRG

Sequences:

>Translated_442_residues
MSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGV
IALKEKYRRAIDALSPLLPAGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQQFPV
TRRTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDNPGFINGGPMMGGLITSLDNPVTKTTGGLLVLPKSHPLIQRR
MQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATPQLLLSALTCSECNVCESVACPVGISPMRI
NRMLKRELRAQNQRYEGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGASAVPTVAVG
ERVTRGQCVADVPPGALGASIHASIDGIVSAISEQAITVVRG
>Mature_441_residues
SLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVI
ALKEKYRRAIDALSPLLPAGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQQFPVT
RRTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDNPGFINGGPMMGGLITSLDNPVTKTTGGLLVLPKSHPLIQRRM
QDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATPQLLLSALTCSECNVCESVACPVGISPMRIN
RMLKRELRAQNQRYEGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTLQLRQHIGASAVPTVAVGE
RVTRGQCVADVPPGALGASIHASIDGIVSAISEQAITVVRG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=333, Percent_Identity=33.033033033033, Blast_Score=150, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47354; Mature: 47223

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQA
CCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHH
ARLVRGVQYAMTATGAREGVIALKEKYRRAIDALSPLLPAGIRLHILPDVYPAGDEVLTI
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE
WMATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQQFPVTRRTLTVNGAVARPLTVTVP
EECCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEE
VGMSLHEVLALAGGATVDNPGFINGGPMMGGLITSLDNPVTKTTGGLLVLPKSHPLIQRR
CCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHH
MQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATPQLLLSALTC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEHHHHHCCCHHHHHHHHHC
SECNVCESVACPVGISPMRINRMLKRELRAQNQRYEGPLNPADEMAKYRLVPVKRLIAKL
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GLSPWYQEAPLVEEEPSVEKVTLQLRQHIGASAVPTVAVGERVTRGQCVADVPPGALGAS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCH
IHASIDGIVSAISEQAITVVRG
HHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
SLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQA
CCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHH
ARLVRGVQYAMTATGAREGVIALKEKYRRAIDALSPLLPAGIRLHILPDVYPAGDEVLTI
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE
WMATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQQFPVTRRTLTVNGAVARPLTVTVP
EECCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEE
VGMSLHEVLALAGGATVDNPGFINGGPMMGGLITSLDNPVTKTTGGLLVLPKSHPLIQRR
CCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHH
MQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATPQLLLSALTC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEHHHHHCCCHHHHHHHHHC
SECNVCESVACPVGISPMRINRMLKRELRAQNQRYEGPLNPADEMAKYRLVPVKRLIAKL
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
GLSPWYQEAPLVEEEPSVEKVTLQLRQHIGASAVPTVAVGERVTRGQCVADVPPGALGAS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCH
IHASIDGIVSAISEQAITVVRG
HHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA