Click here to switch to the map view.

The map label for this gene is spr [H]

Identifier: 29141151

GI number: 29141151

Start: 724097

End: 724669

Strand: Reverse

Name: spr [H]

Synonym: t0641

Alternate gene names: 29141151

Gene position: 724669-724097 (Counterclockwise)

Preceding gene: 29141152

Following gene: 29141150

Centisome position: 15.12

GC content: 49.56

Gene sequence:

>573_bases
ATGGTCAAATCTCAACCGATTTTGAGATATATTTTGCGCGGGATTCCTGCGATTGCAGTTGCGGTTCTGCTTTCTGCTTG
TAGCACAACCACCAATACCGCAAAGAATATGCATTCTGAGACGCATGCTGTGGGCAATAGCGATAGCTCTTCACTGCAAG
CCTCTCAGGATGAATTTGAAAATATGGTGCGTAACCTCGACGTTAAGTCGCGGATTATGGATCAGTATGCTGACTGGAAA
GGTGTGCGTTACCGCCTGGGCGGCAGCACTAAGAAAGGCGTCGACTGTTCCAGCTTTGTACAGCGCACCTTCCGCGAACA
GTTTGGTTTAGAGCTTCCGCGTTCAACCTATGAACAGCAGGAAATGGGCAAAGCGGTTTCACGCAATAACCTGCGTACGG
GCGATCTGGTTCTGTTCCGCGCCGGTTCCACTGGCCGTCATGTCGGTATTTATATCGGCAATAACCAATTTGTCCATGCG
TCTACCAGTAGCGGCGTCATTATCTCCAGTATGAACGAACCGTACTGGAAAAAACGCTACAATGAAGCGCGTCGAGTTCT
GAGCCGCAGTTAA

Upstream 100 bases:

>100_bases
ACAAAGAATTGTCTCAAGCTGTGCAGGTAATTAGTCTCATCACGTTTGGCATTTTTATAACGATATTTATCGTTAAGGAC
TTCAAGGGAAAACAAACAAC

Downstream 100 bases:

>100_bases
TCTTCATCAGGCAGCACCTCCCTTGGCTTACCTGATGAGACGACATAAAAAGCACTGCTTCAGCAGTGCTTTTGCTTATT
ATCCCTTCTGAACCCGTTTT

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MVKSQPILRYILRGIPAIAVAVLLSACSTTTNTAKNMHSETHAVGNSDSSSLQASQDEFENMVRNLDVKSRIMDQYADWK
GVRYRLGGSTKKGVDCSSFVQRTFREQFGLELPRSTYEQQEMGKAVSRNNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHA
STSSGVIISSMNEPYWKKRYNEARRVLSRS

Sequences:

>Translated_190_residues
MVKSQPILRYILRGIPAIAVAVLLSACSTTTNTAKNMHSETHAVGNSDSSSLQASQDEFENMVRNLDVKSRIMDQYADWK
GVRYRLGGSTKKGVDCSSFVQRTFREQFGLELPRSTYEQQEMGKAVSRNNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHA
STSSGVIISSMNEPYWKKRYNEARRVLSRS
>Mature_190_residues
MVKSQPILRYILRGIPAIAVAVLLSACSTTTNTAKNMHSETHAVGNSDSSSLQASQDEFENMVRNLDVKSRIMDQYADWK
GVRYRLGGSTKKGVDCSSFVQRTFREQFGLELPRSTYEQQEMGKAVSRNNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHA
STSSGVIISSMNEPYWKKRYNEARRVLSRS

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=190, Percent_Identity=92.6315789473684, Blast_Score=362, Evalue=1e-102,
Organism=Escherichia coli, GI1788001, Length=123, Percent_Identity=48.780487804878, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1787944, Length=122, Percent_Identity=35.2459016393443, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786421, Length=114, Percent_Identity=35.0877192982456, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 21274; Mature: 21274

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKSQPILRYILRGIPAIAVAVLLSACSTTTNTAKNMHSETHAVGNSDSSSLQASQDEFE
CCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
NMVRNLDVKSRIMDQYADWKGVRYRLGGSTKKGVDCSSFVQRTFREQFGLELPRSTYEQQ
HHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
EMGKAVSRNNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTSSGVIISSMNEPYWKKRY
HHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCEEEEECCCCCEEEECCCCCHHHHHH
NEARRVLSRS
HHHHHHHHCC
>Mature Secondary Structure
MVKSQPILRYILRGIPAIAVAVLLSACSTTTNTAKNMHSETHAVGNSDSSSLQASQDEFE
CCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
NMVRNLDVKSRIMDQYADWKGVRYRLGGSTKKGVDCSSFVQRTFREQFGLELPRSTYEQQ
HHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
EMGKAVSRNNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHASTSSGVIISSMNEPYWKKRY
HHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCEEEEECCCCCEEEECCCCCHHHHHH
NEARRVLSRS
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]