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The map label for this gene is yffH [H]

Identifier: 29140909

GI number: 29140909

Start: 456842

End: 457417

Strand: Direct

Name: yffH [H]

Synonym: t0382

Alternate gene names: 29140909

Gene position: 456842-457417 (Clockwise)

Preceding gene: 29140907

Following gene: 29140910

Centisome position: 9.53

GC content: 48.78

Gene sequence:

>576_bases
ATGTCGCAAACCATTACGCTTATTAAGGATAAAATTCTTTCTGATAATTATTTTACTCTGCGCAACATTACCTATGACCT
GACCCGTCGTAATGGCGAGGTTATCCGTCACAAGCGTGAGGTTTACGATCGCGGGAATGGCGCAACCATTCTGCTTTACA
ACTCAACTAAAAAAACCGTGGTTCTGGTTCGCCAGTTTCGCGTGGCGACATGGGTCAATGGTAATCAAGACGGTATGTTA
ATTGAAACCTGCGCTGGCCTGCTTGATAACGACGAGCCGGAGGTCTGTATCCGTAAAGAGGCCATTGAAGAGACAGGGTA
TGACGTTGGTGAGGTACGCAAGATATTTGAGCTGTATATGTCGCCAGGCGGCGTCACGGAGCTGATTCATTTCTTCATTG
CCGAATATCATGATAGCGAGCGTGCCAGCATCGGCGGCGGCGTGGAGGACGAAGAGATTGAGGTGCTTGAACTACCGTTT
TCCCGGGCGCTGGAAATGGTGCGCTCAGGCGAGATTCGGGACGGTAAGACCGTGTTATTGCTTAACTATTTACAGACGTC
TCATCTAATGGACTGA

Upstream 100 bases:

>100_bases
GCTGTACATCCGTTCAGTCGGCATTAAGGATTAACCCTTCAGCAGACAAAACCGACCTCACGGCGTAATATTAATGCTCT
TTTTACACCCTGGAGCCAGC

Downstream 100 bases:

>100_bases
AAAAAAAGAAATATATTTCTTTACACAAAAAAGACCAATCCGATAAATCTGATTGAGAACCCTGAGGCGCGCAAGGAAGA
TACCGCCTGAGCTGTGTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDRGNGATILLYNSTKKTVVLVRQFRVATWVNGNQDGML
IETCAGLLDNDEPEVCIRKEAIEETGYDVGEVRKIFELYMSPGGVTELIHFFIAEYHDSERASIGGGVEDEEIEVLELPF
SRALEMVRSGEIRDGKTVLLLNYLQTSHLMD

Sequences:

>Translated_191_residues
MSQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDRGNGATILLYNSTKKTVVLVRQFRVATWVNGNQDGML
IETCAGLLDNDEPEVCIRKEAIEETGYDVGEVRKIFELYMSPGGVTELIHFFIAEYHDSERASIGGGVEDEEIEVLELPF
SRALEMVRSGEIRDGKTVLLLNYLQTSHLMD
>Mature_190_residues
SQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDRGNGATILLYNSTKKTVVLVRQFRVATWVNGNQDGMLI
ETCAGLLDNDEPEVCIRKEAIEETGYDVGEVRKIFELYMSPGGVTELIHFFIAEYHDSERASIGGGVEDEEIEVLELPFS
RALEMVRSGEIRDGKTVLLLNYLQTSHLMD

Specific function: Catalyzes the hydrolysis of GDP-mannose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1788810, Length=191, Percent_Identity=87.434554973822, Blast_Score=354, Evalue=2e-99,
Organism=Escherichia coli, GI1789412, Length=187, Percent_Identity=28.3422459893048, Blast_Score=82, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24650557, Length=160, Percent_Identity=33.125, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004385
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: NA

Molecular weight: Translated: 21810; Mature: 21679

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDRGNGATILLYNSTKKTV
CCCHHHHHHHHHCCCCCEEEEHEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCEE
VLVRQFRVATWVNGNQDGMLIETCAGLLDNDEPEVCIRKEAIEETGYDVGEVRKIFELYM
EHHHHHHHEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHC
SPGGVTELIHFFIAEYHDSERASIGGGVEDEEIEVLELPFSRALEMVRSGEIRDGKTVLL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEE
LNYLQTSHLMD
EEHHHHHHCCC
>Mature Secondary Structure 
SQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDRGNGATILLYNSTKKTV
CCHHHHHHHHHCCCCCEEEEHEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCEE
VLVRQFRVATWVNGNQDGMLIETCAGLLDNDEPEVCIRKEAIEETGYDVGEVRKIFELYM
EHHHHHHHEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHC
SPGGVTELIHFFIAEYHDSERASIGGGVEDEEIEVLELPFSRALEMVRSGEIRDGKTVLL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEE
LNYLQTSHLMD
EEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA