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The map label for this gene is recO [H]

Identifier: 29140812

GI number: 29140812

Start: 316849

End: 317577

Strand: Direct

Name: recO [H]

Synonym: t0278

Alternate gene names: 29140812

Gene position: 316849-317577 (Clockwise)

Preceding gene: 29140811

Following gene: 29140813

Centisome position: 6.61

GC content: 55.42

Gene sequence:

>729_bases
GTGGAAGGGTGGCAGCGCGCATTTGTCCTGCACAGTCGCCCCTGGAGCGAAACCAGCCTGATGCTGGACGTCTTCACGGA
AGAATCGGGGCGCGTGCGCCTTGTCGCCAAAGGCGCGCGATCTAAACGTTCCAATCTGAAAGGCGCGTTGCAGCCTTTTA
CGCCGTTATTGCTACGCTACAGCGGACGCGGCGAGGTGAAAACCCTGCGCAGCGCCGAGGCAGTTTCTCTGGCGCTGCCG
TTAAGCGGTATTACGCTCTATAGCGGCCTGTATATCAACGAACTCCTCTCTCGCGTACTGGAATATGAAACGCGCTTCTC
CGAACTCTTTTTTGATTATCTGAACTGTATTCAGGCGCTGGCGGGAACCACCGGCTCGCCTGAACCGGCGTTGCGACGTT
TCGAACTGGCGTTGCTGGGACATCTGGGGTATGGCGTCAATTTCACCCACTGTGCAGGCAGCGGCGAACGGGTGGATGAC
ACCATGACCTACCGTTACCGCGAAGAAAAAGGCTTTTTCGCCAGCGTCGTCATCGATAACAACACCTTTACCGGACGGCA
CCTGAAAGCGCTGGAGGCGCGGGAATTTCCGGATGTAGATACCCTGCGTGCCGCTAAACGCTTTACCCGTATGGCATTAA
AGCCGTATCTTGGGGGAAAACCGTTAAAAAGCCGGGAGCTGTTCCGGCAATTTATGCCCAAACGCACAGTAAAAACGAAG
AAAGATTAA

Upstream 100 bases:

>100_bases
TACACCTGGAACTGTGGGTGAAAGTGAAATCCGGCTGGGCCGATGACGAACGCGCTCTGCGCAGTCTCGGTTACGTAGAC
GATCTGTGAGTTAACACAGC

Downstream 100 bases:

>100_bases
CGAGGATTGTCATGGCTGAATTACTGTTAGGCGTCAATATTGACCACATTGCCACGTTACGTAATGCGCGCGGCACCGAC
TATCCGGATCCGGTACAGGC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKTLRSAEAVSLALP
LSGITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDD
TMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVDTLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTK
KD

Sequences:

>Translated_242_residues
MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKTLRSAEAVSLALP
LSGITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDD
TMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVDTLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTK
KD
>Mature_242_residues
MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKTLRSAEAVSLALP
LSGITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDD
TMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVDTLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTK
KD

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

Organism=Escherichia coli, GI2367140, Length=239, Percent_Identity=94.5606694560669, Blast_Score=460, Evalue=1e-131,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 27472; Mature: 27472

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRY
CCCHHEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHCCCCCCHHHHHHEEE
SGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQAL
CCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASVVIDN
HCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEECCCCCEEEEEEEC
NTFTGRHLKALEAREFPDVDTLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTK
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC
KD
CC
>Mature Secondary Structure
MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRY
CCCHHEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCHHHHHCCCCCCHHHHHHEEE
SGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQAL
CCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASVVIDN
HCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEECCCCCEEEEEEEC
NTFTGRHLKALEAREFPDVDTLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTK
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCC
KD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA