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The map label for this gene is rcsF [H]

Identifier: 29140785

GI number: 29140785

Start: 283289

End: 283693

Strand: Reverse

Name: rcsF [H]

Synonym: t0247

Alternate gene names: 29140785

Gene position: 283693-283289 (Counterclockwise)

Preceding gene: 29140786

Following gene: 29140784

Centisome position: 5.92

GC content: 54.32

Gene sequence:

>405_bases
ATGCGTGCTTTACCGATCTGTTTATTGGCACTCATGCTGGGCGGTTGTTCCATGCTAAGCAGATCCCCTGTTGAACCTGT
TCAAAGCACCGCAACCCCGCCAAAAGCGGAGCCGGAGAAACCTAAAGCGCCGCGTGCCGCTCCCGTCAGGATTTACACCA
ATGCTGAAGACTTAGTCGGCAAACCTTTCCGCGATCTTGGCGAGGTTAGCGGCGAATCCTGCCAGGCGACAAATCAAGAC
TCTCCGCCTAACATTCCAACTGCGCGCAAGCGTATGCAGATTAATGCATCTAAAATGAAAGCCAACGCCGTCCTGCTGCA
CAGCTGTGAAATTACCAGCGGCACGCCAGGCTGCTACCGTCAGGCGGTTTGTATCGGGTCCGCCCTGAATATTTCGGCGA
AATGA

Upstream 100 bases:

>100_bases
AATCTGTAATATTATTCAGGACGGGCTATTGCCCGTCTTGTCATTTATGCAAGCTCCTGATTCAATATCTGGCAATTAGA
ACATTCATTGAGGAAATATT

Downstream 100 bases:

>100_bases
GCAGCTTTCAGTTTGATCAAATCGGCGTTATTCGCTCCCCCTATAAAGAAAAATTCGCCGTTCCGCGCCAGCCTGGTCTG
GTCAAAAGCGCCTGCGGCGA

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MRALPICLLALMLGGCSMLSRSPVEPVQSTATPPKAEPEKPKAPRAAPVRIYTNAEDLVGKPFRDLGEVSGESCQATNQD
SPPNIPTARKRMQINASKMKANAVLLHSCEITSGTPGCYRQAVCIGSALNISAK

Sequences:

>Translated_134_residues
MRALPICLLALMLGGCSMLSRSPVEPVQSTATPPKAEPEKPKAPRAAPVRIYTNAEDLVGKPFRDLGEVSGESCQATNQD
SPPNIPTARKRMQINASKMKANAVLLHSCEITSGTPGCYRQAVCIGSALNISAK
>Mature_134_residues
MRALPICLLALMLGGCSMLSRSPVEPVQSTATPPKAEPEKPKAPRAAPVRIYTNAEDLVGKPFRDLGEVSGESCQATNQD
SPPNIPTARKRMQINASKMKANAVLLHSCEITSGTPGCYRQAVCIGSALNISAK

Specific function: Essential component of the Rcs signaling system to promote transcription of the genes for colanic acid capsule synthesis. Together with rcsC, they probably promote the phosphorylation of rcsB [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786394, Length=134, Percent_Identity=91.044776119403, Blast_Score=252, Evalue=7e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14190; Mature: 14190

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALPICLLALMLGGCSMLSRSPVEPVQSTATPPKAEPEKPKAPRAAPVRIYTNAEDLVG
CCCHHHHHHHHHHCCHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHC
KPFRDLGEVSGESCQATNQDSPPNIPTARKRMQINASKMKANAVLLHSCEITSGTPGCYR
CCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCEEEEEECCCCCCCCHHHH
QAVCIGSALNISAK
HHHHHCCCCCCCCC
>Mature Secondary Structure
MRALPICLLALMLGGCSMLSRSPVEPVQSTATPPKAEPEKPKAPRAAPVRIYTNAEDLVG
CCCHHHHHHHHHHCCHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHC
KPFRDLGEVSGESCQATNQDSPPNIPTARKRMQINASKMKANAVLLHSCEITSGTPGCYR
CCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCEEEEEECCCCCCCCHHHH
QAVCIGSALNISAK
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Stimulates colanic acid capsule synthesis [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]