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The map label for this gene is yaeB [H]

Identifier: 29140784

GI number: 29140784

Start: 282585

End: 283292

Strand: Reverse

Name: yaeB [H]

Synonym: t0246

Alternate gene names: 29140784

Gene position: 283292-282585 (Counterclockwise)

Preceding gene: 29140785

Following gene: 29140783

Centisome position: 5.91

GC content: 55.51

Gene sequence:

>708_bases
ATGAGCAGCTTTCAGTTTGATCAAATCGGCGTTATTCGCTCCCCCTATAAAGAAAAATTCGCCGTTCCGCGCCAGCCTGG
TCTGGTCAAAAGCGCCTGCGGCGAACTGCATCTGATAGCGCCTTACAACCAGGCCGATGCCGTTCGCGGCCTGGAAGCGT
TCAGCCATTTGTGGGTGCTTTTCGTTTTTCATCAGACGATGGACGGCGGCTGGCGGCCAACAGTTCGTCCGCCCCGTCTT
GGCGGTAACGCCAGAATGGGCGTTTTTGCCACGCGCTCCACGTTCCGCCCCAATCCGATTGGCATGTCGCTCGTTGCGCT
AAAAGGTATCGAGTGCCGGAAAGAGAGCGTAATTCTGAAATTAGGCAGTCTGGATCTGGTGGATGGCACGCCGGTGGTGG
ATATCAAACCGTATTTACCGTTTGCCGAGGCCTTACCGGACGCCGCCGCCAGCTATGCGCAACAGGCGCCGATAGCTGAA
ATGCCTGTGAGTTTTACCGCTGAAGTGGCTCAACAGCTTACGACGCTGGAAAGGCGTTATCCGCAGCTACGGACATTTAT
TTGCGATGTGCTGGCGCAAGATCCTCGCCCGGCTTATCGTAAGGGTGAAGAGACGGGCAAAACCTATGCCGTCTGGCTGC
ATGATTTTAACGTGCGCTGGCGTGTGGTTAACACCGGATTTGAAGTGTTTGCGCTGGAACCACGGTAA

Upstream 100 bases:

>100_bases
CCAACGCCGTCCTGCTGCACAGCTGTGAAATTACCAGCGGCACGCCAGGCTGCTACCGTCAGGCGGTTTGTATCGGGTCC
GCCCTGAATATTTCGGCGAA

Downstream 100 bases:

>100_bases
TTTCACGCCCTTCTCTTTTGACATCTCTTGCACGCTGGTAAACTAAATCACTTTTTTTGTATCAGGCTCACATTGAGCCT
GTTCGATCGTTCAACTGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSSFQFDQIGVIRSPYKEKFAVPRQPGLVKSACGELHLIAPYNQADAVRGLEAFSHLWVLFVFHQTMDGGWRPTVRPPRL
GGNARMGVFATRSTFRPNPIGMSLVALKGIECRKESVILKLGSLDLVDGTPVVDIKPYLPFAEALPDAAASYAQQAPIAE
MPVSFTAEVAQQLTTLERRYPQLRTFICDVLAQDPRPAYRKGEETGKTYAVWLHDFNVRWRVVNTGFEVFALEPR

Sequences:

>Translated_235_residues
MSSFQFDQIGVIRSPYKEKFAVPRQPGLVKSACGELHLIAPYNQADAVRGLEAFSHLWVLFVFHQTMDGGWRPTVRPPRL
GGNARMGVFATRSTFRPNPIGMSLVALKGIECRKESVILKLGSLDLVDGTPVVDIKPYLPFAEALPDAAASYAQQAPIAE
MPVSFTAEVAQQLTTLERRYPQLRTFICDVLAQDPRPAYRKGEETGKTYAVWLHDFNVRWRVVNTGFEVFALEPR
>Mature_234_residues
SSFQFDQIGVIRSPYKEKFAVPRQPGLVKSACGELHLIAPYNQADAVRGLEAFSHLWVLFVFHQTMDGGWRPTVRPPRLG
GNARMGVFATRSTFRPNPIGMSLVALKGIECRKESVILKLGSLDLVDGTPVVDIKPYLPFAEALPDAAASYAQQAPIAEM
PVSFTAEVAQQLTTLERRYPQLRTFICDVLAQDPRPAYRKGEETGKTYAVWLHDFNVRWRVVNTGFEVFALEPR

Specific function: Unknown

COG id: COG1720

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0066 (virR) family [H]

Homologues:

Organism=Homo sapiens, GI118600979, Length=133, Percent_Identity=40.6015037593985, Blast_Score=103, Evalue=1e-22,
Organism=Escherichia coli, GI1786393, Length=235, Percent_Identity=88.936170212766, Blast_Score=436, Evalue=1e-124,
Organism=Drosophila melanogaster, GI24586408, Length=163, Percent_Identity=42.3312883435583, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI45552503, Length=142, Percent_Identity=45.0704225352113, Blast_Score=109, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001378 [H]

Pfam domain/function: PF01980 UPF0066 [H]

EC number: NA

Molecular weight: Translated: 26295; Mature: 26163

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS01318 UPF0066

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFQFDQIGVIRSPYKEKFAVPRQPGLVKSACGELHLIAPYNQADAVRGLEAFSHLWVL
CCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHH
FVFHQTMDGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGMSLVALKGIECRKESVILK
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEE
LGSLDLVDGTPVVDIKPYLPFAEALPDAAASYAQQAPIAEMPVSFTAEVAQQLTTLERRY
ECCEEEECCCCEEEECCCCCHHHHCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHH
PQLRTFICDVLAQDPRPAYRKGEETGKTYAVWLHDFNVRWRVVNTGFEVFALEPR
HHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEEEECCEEEEEEECCEEEEEECCC
>Mature Secondary Structure 
SSFQFDQIGVIRSPYKEKFAVPRQPGLVKSACGELHLIAPYNQADAVRGLEAFSHLWVL
CCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHH
FVFHQTMDGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGMSLVALKGIECRKESVILK
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEE
LGSLDLVDGTPVVDIKPYLPFAEALPDAAASYAQQAPIAEMPVSFTAEVAQQLTTLERRY
ECCEEEECCCCEEEECCCCCHHHHCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHH
PQLRTFICDVLAQDPRPAYRKGEETGKTYAVWLHDFNVRWRVVNTGFEVFALEPR
HHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEEEECCEEEEEEECCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1459951; 9278503 [H]