Click here to switch to the map view.

The map label for this gene is ligT [H]

Identifier: 29140737

GI number: 29140737

Start: 222150

End: 222680

Strand: Reverse

Name: ligT [H]

Synonym: t0196

Alternate gene names: 29140737

Gene position: 222680-222150 (Counterclockwise)

Preceding gene: 29140743

Following gene: 29140736

Centisome position: 4.65

GC content: 61.39

Gene sequence:

>531_bases
ATGTCTGAGCCAAAACGGCTGTTTTTTGCTATTGACTTACCCGACGACGCGCGCGCGCAAATTATCGCCTGGCGCGCCGC
CCATTTTGCGTCTGAAGACGGACGCCCCGTGGCAGCGGCGAACCTACACCTGACGCTGGCCTTTTTAGGCGACGTCAGTA
ACGATAAGCAGCGCGCGCTTGCGCAACTGGCCGGACGAATTCGCCAACCGGGCTTTACGCTACATCTAGATGACGCCGGT
CAGTGGTTGCGTTCGCGCGTTGTGTGGCTGGGAATGCGCCAGCCGCCGCGCGGGTTGTTGCAGTTGGCTAATATGCTGCG
CGCGCAGGCCGCCCGCAGCGGTTGTTACCAAAGCCCGCAGCCTTTTCACCCGCATATTACGCTGCTGCGCGACGCCAGCC
ATACGGTGGCTATCCCGCCGCCGGGCTTTTGCTGGTCATTTCCGGTCACATCGTTTGCGCTTTACGCCTCTTCGTATGGG
CAAGGCCGTACCCGCTATGCCGAGCTGCAGCGCTGGACGCTGGGCGAATAA

Upstream 100 bases:

>100_bases
ATACGGCGGCAACGGGCAATGACGTCACAAACGGCTCCACGGGGTTAACTTTCTTTGCGCCGCATTGTAGCATCGTGTTA
ATCCATAACCGAGTATCCCT

Downstream 100 bases:

>100_bases
TAATCAAGGAATGTCGATGCTATTCTCACCCCCTTTACAACGCGCTACGTTGATTCAGCGCTATAAACGTTTTTTAGCTG
ATGTCATCACCCCTGACGGT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHLTLAFLGDVSNDKQRALAQLAGRIRQPGFTLHLDDAG
QWLRSRVVWLGMRQPPRGLLQLANMLRAQAARSGCYQSPQPFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYG
QGRTRYAELQRWTLGE

Sequences:

>Translated_176_residues
MSEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHLTLAFLGDVSNDKQRALAQLAGRIRQPGFTLHLDDAG
QWLRSRVVWLGMRQPPRGLLQLANMLRAQAARSGCYQSPQPFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYG
QGRTRYAELQRWTLGE
>Mature_175_residues
SEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHLTLAFLGDVSNDKQRALAQLAGRIRQPGFTLHLDDAGQ
WLRSRVVWLGMRQPPRGLLQLANMLRAQAARSGCYQSPQPFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYGQ
GRTRYAELQRWTLGE

Specific function: Specifically ligates tRNA half-molecules containing nucleoside base modifications and shows a preference among different tRNA species. Acts in the absence of ATP to form a 2'-5' phosphodiester linkage [H]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081692, Length=176, Percent_Identity=76.7045454545455, Blast_Score=281, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: 6.5.1.- [C]

Molecular weight: Translated: 19662; Mature: 19530

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHLTLAFLGDVSNDKQRAL
CCCCCEEEEEEECCCCCCHHEEEHHHHHHCCCCCCEEEEEHEEEEEEEECCCCCHHHHHH
AQLAGRIRQPGFTLHLDDAGQWLRSRVVWLGMRQPPRGLLQLANMLRAQAARSGCYQSPQ
HHHHHHHCCCCCEEEECCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYGQGRTRYAELQRWTLGE
CCCCCEEEEECCCCEEEECCCCCEECCCHHHHHHHHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHLTLAFLGDVSNDKQRAL
CCCCEEEEEEECCCCCCHHEEEHHHHHHCCCCCCEEEEEHEEEEEEEECCCCCHHHHHH
AQLAGRIRQPGFTLHLDDAGQWLRSRVVWLGMRQPPRGLLQLANMLRAQAARSGCYQSPQ
HHHHHHHCCCCCEEEECCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYGQGRTRYAELQRWTLGE
CCCCCEEEEECCCCEEEECCCCCEECCCHHHHHHHHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 2013578; 8940112 [H]