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The map label for this gene is 28378494

Identifier: 28378494

GI number: 28378494

Start: 1655652

End: 1656506

Strand: Direct

Name: 28378494

Synonym: lp_1833

Alternate gene names: NA

Gene position: 1655652-1656506 (Clockwise)

Preceding gene: 28378493

Following gene: 28378495

Centisome position: 50.05

GC content: 43.16

Gene sequence:

>855_bases
ATGACCGCTAAATTTCCGTATGCTAAAAGCTTTCTCGCCTCATTAGAAACTGCTGGCAAGCAAGCTAGTACGATTGAGCA
ATATGAATTAACCTTGGCTGACTTTTTCAACTATGAGCAGCATTTCAATGAGACCTTTGCTAAGGATCAATTACTAGCAG
ATTTAACTGAGAATGATATTCAAGCTTACTTGGCAATGCTCCGTGAACAACGCCAATTCAAAACATCGACACTGAACAAA
TGTCTGTCGAATCTAAACGGCTACTTTAGCTATTTATTTTCACACCGAATTATTACAACTTTACCAACCTTTACAATTAA
AGGGCAACCCTTGACCAATCGTCAACAAACAACGACCTGGCCAGAGCAATTAGCGGCATGGTTAGCAATGGATGATCTAC
ATCCATACACCCGCTTATTCTTGTTACTAACGACCAAGGGTTATACTGCCACGGAGATGCTAACCCCAGGGTTTTATCAG
CAGTTGAATGCAATTACCTTTACAGCAGTAGAACAGGCTTTTCTGGTTAAACTACGGGCCTATTTGCAGCCATTACAGAC
TCAAAGTGGTAGTTCGGACCTTTTTTTAAAGCAGCGTCAACGCGGAACCGACCCACATCTCACCCTCGCGGCATTGCATA
AATACTTGGCGGGTGATAGTCAACGTTTAGGTGTGCCATTAAAGCCGGTTGCATTGCGCCAGGACTTCATGCTGTGGTTT
CTCAATCAACACCGGACGACCGAACCGACTGAGATCATGCAACAACTACGGTTAGATGAAACCAGCCTCGAATATTACCA
AAACTTGCTACGACAACGTGATTTGCGAACTTTAAAAGCCACTAAAACCGACTAA

Upstream 100 bases:

>100_bases
GAACGCGTCTCTCAGCATCGGTAAAATCGCTTGTTTTTGTTGTAAATTTATGTTTTAGTTAAAGTAAGAATTCTAACCCA
GAAAGGATGTCCTACTATCA

Downstream 100 bases:

>100_bases
GTGACACTGATGGGCTAACTGCTACAGTTAGCTTTTTTAGTTAAAGTAACTTTACGTTGTTGCACGATCTTTACATAACT
TTACAAACACGTCACAAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: Integrase/Recombinase XerD; Site-Specific Recombinase XerD

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MTAKFPYAKSFLASLETAGKQASTIEQYELTLADFFNYEQHFNETFAKDQLLADLTENDIQAYLAMLREQRQFKTSTLNK
CLSNLNGYFSYLFSHRIITTLPTFTIKGQPLTNRQQTTTWPEQLAAWLAMDDLHPYTRLFLLLTTKGYTATEMLTPGFYQ
QLNAITFTAVEQAFLVKLRAYLQPLQTQSGSSDLFLKQRQRGTDPHLTLAALHKYLAGDSQRLGVPLKPVALRQDFMLWF
LNQHRTTEPTEIMQQLRLDETSLEYYQNLLRQRDLRTLKATKTD

Sequences:

>Translated_284_residues
MTAKFPYAKSFLASLETAGKQASTIEQYELTLADFFNYEQHFNETFAKDQLLADLTENDIQAYLAMLREQRQFKTSTLNK
CLSNLNGYFSYLFSHRIITTLPTFTIKGQPLTNRQQTTTWPEQLAAWLAMDDLHPYTRLFLLLTTKGYTATEMLTPGFYQ
QLNAITFTAVEQAFLVKLRAYLQPLQTQSGSSDLFLKQRQRGTDPHLTLAALHKYLAGDSQRLGVPLKPVALRQDFMLWF
LNQHRTTEPTEIMQQLRLDETSLEYYQNLLRQRDLRTLKATKTD
>Mature_283_residues
TAKFPYAKSFLASLETAGKQASTIEQYELTLADFFNYEQHFNETFAKDQLLADLTENDIQAYLAMLREQRQFKTSTLNKC
LSNLNGYFSYLFSHRIITTLPTFTIKGQPLTNRQQTTTWPEQLAAWLAMDDLHPYTRLFLLLTTKGYTATEMLTPGFYQQ
LNAITFTAVEQAFLVKLRAYLQPLQTQSGSSDLFLKQRQRGTDPHLTLAALHKYLAGDSQRLGVPLKPVALRQDFMLWFL
NQHRTTEPTEIMQQLRLDETSLEYYQNLLRQRDLRTLKATKTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32920; Mature: 32789

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TAKFPYAKSFLASLETAGKQASTIEQYELTLADFFNYEQHFNETFAKDQLLADLTENDI
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAYLAMLREQRQFKTSTLNKCLSNLNGYFSYLFSHRIITTLPTFTIKGQPLTNRQQTTTW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC
PEQLAAWLAMDDLHPYTRLFLLLTTKGYTATEMLTPGFYQQLNAITFTAVEQAFLVKLRA
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
YLQPLQTQSGSSDLFLKQRQRGTDPHLTLAALHKYLAGDSQRLGVPLKPVALRQDFMLWF
HHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
LNQHRTTEPTEIMQQLRLDETSLEYYQNLLRQRDLRTLKATKTD
HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA