| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is 28377438
Identifier: 28377438
GI number: 28377438
Start: 512374
End: 512898
Strand: Direct
Name: 28377438
Synonym: lp_0555
Alternate gene names: NA
Gene position: 512374-512898 (Clockwise)
Preceding gene: 28377437
Following gene: 28377439
Centisome position: 15.49
GC content: 42.48
Gene sequence:
>525_bases ATGGCCCATATCTGGATGCAAAGGCATTTACCTGCCAGAGATGACGTGGTTATTAAGTATATGACTAGTAGTCAGTTATT CAGAATTATAAGATGTTTATTCAATCGAACCTCGAAAATTGAGTTTGTTAGCGTTAAGCTTAATTTAAGAAATCATACCA TCATAAATAACGTAAGCGACCATGATGATGACCAAGGAGGATTTGAAATGGCGGTAACTAAAATTGATTTAAAAACCACG ATGACTTACCGGGAGCATGCAATTACTAGTAAATCATTTGCTCGAAAATTAGGGATTGAACTGCCGTTTGCGATGTACGC AATGGCGGCGGGTGAAAGTATTAGTGCTGAACAATCCACGCTGACCCGCTTATTTGAGGTTGTTGATGGTACTTTGACCG TCCGTTTGGCGACGGAGACCGACCAAGAAGTGCATGCGGGCGAGATGTTAGTGGTGCCAGCTCATACGGTCCATACGTTG GTCGCTGAGCAGCCGTGCCAGTTTATTCAATTAGAAACGAAATAG
Upstream 100 bases:
>100_bases AACTAGTTGACTGAATAAATCAAATTTTCCACAGAACTGTTATCAAATGTAGTAACAGCAGACTGTTCAGCGTCGCAATG ACGCTTGGACAGCTTTTTGC
Downstream 100 bases:
>100_bases GCCTTAATAGCGAGATGCGGAGGAATTCAAATGAGTTTAATTAACAAAATTGATCATGCTAAGGTCCTCGATTTAACTGA ACAAATTCCACTGGATGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MAHIWMQRHLPARDDVVIKYMTSSQLFRIIRCLFNRTSKIEFVSVKLNLRNHTIINNVSDHDDDQGGFEMAVTKIDLKTT MTYREHAITSKSFARKLGIELPFAMYAMAAGESISAEQSTLTRLFEVVDGTLTVRLATETDQEVHAGEMLVVPAHTVHTL VAEQPCQFIQLETK
Sequences:
>Translated_174_residues MAHIWMQRHLPARDDVVIKYMTSSQLFRIIRCLFNRTSKIEFVSVKLNLRNHTIINNVSDHDDDQGGFEMAVTKIDLKTT MTYREHAITSKSFARKLGIELPFAMYAMAAGESISAEQSTLTRLFEVVDGTLTVRLATETDQEVHAGEMLVVPAHTVHTL VAEQPCQFIQLETK >Mature_173_residues AHIWMQRHLPARDDVVIKYMTSSQLFRIIRCLFNRTSKIEFVSVKLNLRNHTIINNVSDHDDDQGGFEMAVTKIDLKTTM TYREHAITSKSFARKLGIELPFAMYAMAAGESISAEQSTLTRLFEVVDGTLTVRLATETDQEVHAGEMLVVPAHTVHTLV AEQPCQFIQLETK
Specific function: Unknown
COG id: COG1917
COG function: function code S; Uncharacterized conserved protein, contains double-stranded beta-helix domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19751; Mature: 19620
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHIWMQRHLPARDDVVIKYMTSSQLFRIIRCLFNRTSKIEFVSVKLNLRNHTIINNVSD CCCEEEECCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEECCCCC HDDDQGGFEMAVTKIDLKTTMTYREHAITSKSFARKLGIELPFAMYAMAAGESISAEQST CCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHH LTRLFEVVDGTLTVRLATETDQEVHAGEMLVVPAHTVHTLVAEQPCQFIQLETK HHHHHHHHCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHCCCEEEEEECC >Mature Secondary Structure AHIWMQRHLPARDDVVIKYMTSSQLFRIIRCLFNRTSKIEFVSVKLNLRNHTIINNVSD CCEEEECCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEECCCCC HDDDQGGFEMAVTKIDLKTTMTYREHAITSKSFARKLGIELPFAMYAMAAGESISAEQST CCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHH LTRLFEVVDGTLTVRLATETDQEVHAGEMLVVPAHTVHTLVAEQPCQFIQLETK HHHHHHHHCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA