Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 77747678
Identifier: 77747678
GI number: 77747678
Start: 1294702
End: 1296294
Strand: Reverse
Name: 77747678
Synonym: PD1095
Alternate gene names: NA
Gene position: 1296294-1294702 (Counterclockwise)
Preceding gene: 28198988
Following gene: 28198986
Centisome position: 51.44
GC content: 57.31
Gene sequence:
>1593_bases ATGACCCCACTCCAAATCACCATCACCCCCCAGGGCCGCGCCGCCCTAGTGAACGCCCAACATCATGGCACCGTCCCCGT GCGGCTGGCCTCTGTCGGCCTGACCGCACAACACTTTGACCCCACCGCGGCAACGATGCCTGATGAATCCAAACGCCTGA CCACCTTCTCAGGCGGCGTGGTGGCCGCAGACACCATTCACATCACTATCCGCGATGCAACTAGCGACCAGTACGACGTC CGCGGCTTTGGCGTCTACCTGGATGATGGCACCTTATTTGCCACCTACTCCCAACAGGACATCATTCTCAGCAAATCCGC ATCGGCCATGCTACTGCTGGCCATTGATGTTCGGTTCGTAGATACCGATGCGACTCAACTCACCTTCGGTGAAACCTCCT GGAACAACCCACCGGCGACACAGACAGTGGCAGGCGTGCTCACCTTGTCCAGCAACGCCCAAGCCATCGCGGGCCTGGAG GATCGCAGCGCCATACCGCCTACCGCATTGAAAGCCACCCTGGATCACCGCCTAGGCGAAGCCGCCCCTTCCGACTACGC CAAAACACTGCTGGCCAGCGCCGATGCGCCCACCCTCCGCCACCTGCTGGGCCTAGGCGATGCTGCCGTGATGGACACCG GATCAGGAAAAAACTTGGACGCAGATTTACTTGACGGCTATCACGGCACCTACTACCTACAATGGAGAAACCTCCAGAAC ACACCACAGACCTATCCACCGAGTGCCCACCAGCACGCCAGCAGCGATATCCCAGAACTGGCCTCGCAACTAGATACTCT GGTGAAAAAAACAGGAAGCCTCATGACCGGCTCGCTCCAATCCCAAGGCACCCTGATTGGTGACGCACTGGGTAACGGAC GCATTCCGGCACTGAAAATCGGTAACGATTGCGAATTCTGGGACAACAATATCCCTTACGCAGCCACCTTCCGCAGCGGA ACATCCCCAGCCATCGCACAACTGTTCTTCGGCACCAGCAACCATTGCTATTTCGGCACCAGCACCAAAAACACCAGCAC AGTGATTGGCGCAAAAACGGGCTTACTGTGGATTGAAACCGCAGGCAATTACTACTACCAACAACACGACACGACCCACG TTGCCTTTTACAAAAAGAACGGAGGCCACGCCTTTTTCTGGAGACGTAGCGACAGCGGCGGCAGCGGCAGTACCAATGAA GTACAACTGATGGCACTGGAAGACAATGGCAACCTGTCAGTGAAAGGCACTATCGTCTCGGCAGGCGGCTACGCCCAAGG CTCCTCCCGAAAACTCAAAGACATTGAAGGCCCCTTGCCCTATGGCTTGGCAGAGATTGAACAACTCACCCCCCTGATCG GACGCTACAAACCCTCCTACACCCCCGACGGACGCCGCCGCCTATTTTTAGAGGCAGAACAACTACTGGACCTGATGCCG GAAACGGTCAATCCCGAAGGCATCCCCTTCCAAGGCGCTTACGTCCCCTCGGTCAACCTGGACCAACTCCTGCCTGTACT GGTGAATGCCATTGCACAGCTATCAGCCAAAGTAAACGCACTGACCGACGCGCCACGCCACGCGGAAAAATAG
Upstream 100 bases:
>100_bases ACCCAGGGCGTGCACACCATCGGACAGATTGGCCTGCTGGGTGGCGCACAGATCACCGCGTACCGACGCCTACACCTCAC CCAGGCCGCATGAGGATGTT
Downstream 100 bases:
>100_bases CCACAGGACAGCAAACAGCTGTCGCACCGATCATCTCCCCGTCTTACAGCAGATGAAGGGCCTGATGACGGAACACTATC TACATGGCGTTGAAGTGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 530; Mature: 529
Protein sequence:
>530_residues MTPLQITITPQGRAALVNAQHHGTVPVRLASVGLTAQHFDPTAATMPDESKRLTTFSGGVVAADTIHITIRDATSDQYDV RGFGVYLDDGTLFATYSQQDIILSKSASAMLLLAIDVRFVDTDATQLTFGETSWNNPPATQTVAGVLTLSSNAQAIAGLE DRSAIPPTALKATLDHRLGEAAPSDYAKTLLASADAPTLRHLLGLGDAAVMDTGSGKNLDADLLDGYHGTYYLQWRNLQN TPQTYPPSAHQHASSDIPELASQLDTLVKKTGSLMTGSLQSQGTLIGDALGNGRIPALKIGNDCEFWDNNIPYAATFRSG TSPAIAQLFFGTSNHCYFGTSTKNTSTVIGAKTGLLWIETAGNYYYQQHDTTHVAFYKKNGGHAFFWRRSDSGGSGSTNE VQLMALEDNGNLSVKGTIVSAGGYAQGSSRKLKDIEGPLPYGLAEIEQLTPLIGRYKPSYTPDGRRRLFLEAEQLLDLMP ETVNPEGIPFQGAYVPSVNLDQLLPVLVNAIAQLSAKVNALTDAPRHAEK
Sequences:
>Translated_530_residues MTPLQITITPQGRAALVNAQHHGTVPVRLASVGLTAQHFDPTAATMPDESKRLTTFSGGVVAADTIHITIRDATSDQYDV RGFGVYLDDGTLFATYSQQDIILSKSASAMLLLAIDVRFVDTDATQLTFGETSWNNPPATQTVAGVLTLSSNAQAIAGLE DRSAIPPTALKATLDHRLGEAAPSDYAKTLLASADAPTLRHLLGLGDAAVMDTGSGKNLDADLLDGYHGTYYLQWRNLQN TPQTYPPSAHQHASSDIPELASQLDTLVKKTGSLMTGSLQSQGTLIGDALGNGRIPALKIGNDCEFWDNNIPYAATFRSG TSPAIAQLFFGTSNHCYFGTSTKNTSTVIGAKTGLLWIETAGNYYYQQHDTTHVAFYKKNGGHAFFWRRSDSGGSGSTNE VQLMALEDNGNLSVKGTIVSAGGYAQGSSRKLKDIEGPLPYGLAEIEQLTPLIGRYKPSYTPDGRRRLFLEAEQLLDLMP ETVNPEGIPFQGAYVPSVNLDQLLPVLVNAIAQLSAKVNALTDAPRHAEK >Mature_529_residues TPLQITITPQGRAALVNAQHHGTVPVRLASVGLTAQHFDPTAATMPDESKRLTTFSGGVVAADTIHITIRDATSDQYDVR GFGVYLDDGTLFATYSQQDIILSKSASAMLLLAIDVRFVDTDATQLTFGETSWNNPPATQTVAGVLTLSSNAQAIAGLED RSAIPPTALKATLDHRLGEAAPSDYAKTLLASADAPTLRHLLGLGDAAVMDTGSGKNLDADLLDGYHGTYYLQWRNLQNT PQTYPPSAHQHASSDIPELASQLDTLVKKTGSLMTGSLQSQGTLIGDALGNGRIPALKIGNDCEFWDNNIPYAATFRSGT SPAIAQLFFGTSNHCYFGTSTKNTSTVIGAKTGLLWIETAGNYYYQQHDTTHVAFYKKNGGHAFFWRRSDSGGSGSTNEV QLMALEDNGNLSVKGTIVSAGGYAQGSSRKLKDIEGPLPYGLAEIEQLTPLIGRYKPSYTPDGRRRLFLEAEQLLDLMPE TVNPEGIPFQGAYVPSVNLDQLLPVLVNAIAQLSAKVNALTDAPRHAEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56742; Mature: 56611
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLQITITPQGRAALVNAQHHGTVPVRLASVGLTAQHFDPTAATMPDESKRLTTFSGGV CCCEEEEECCCCCEEEEECCCCCCCEEEEEEECCEEECCCCCCCCCCCCCCEEEEECCCE VAADTIHITIRDATSDQYDVRGFGVYLDDGTLFATYSQQDIILSKSASAMLLLAIDVRFV EEEEEEEEEEEECCCCCEEEEEEEEEEECCEEEEEECCCEEEEECCCCEEEEEEEEEEEE DTDATQLTFGETSWNNPPATQTVAGVLTLSSNAQAIAGLEDRSAIPPTALKATLDHRLGE ECCCCEEEECCCCCCCCCCHHHEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHCC AAPSDYAKTLLASADAPTLRHLLGLGDAAVMDTGSGKNLDADLLDGYHGTYYLQWRNLQN CCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHCCCCCEEEEEECCCCC TPQTYPPSAHQHASSDIPELASQLDTLVKKTGSLMTGSLQSQGTLIGDALGNGRIPALKI CCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCCEEEE GNDCEFWDNNIPYAATFRSGTSPAIAQLFFGTSNHCYFGTSTKNTSTVIGAKTGLLWIET CCCCCCCCCCCCEEEEECCCCCHHHHHEEECCCCCEEEECCCCCCEEEEEECCCEEEEEE AGNYYYQQHDTTHVAFYKKNGGHAFFWRRSDSGGSGSTNEVQLMALEDNGNLSVKGTIVS CCCEEEEECCCEEEEEEEECCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEEEE AGGYAQGSSRKLKDIEGPLPYGLAEIEQLTPLIGRYKPSYTPDGRRRLFLEAEQLLDLMP CCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHCC ETVNPEGIPFQGAYVPSVNLDQLLPVLVNAIAQLSAKVNALTDAPRHAEK CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TPLQITITPQGRAALVNAQHHGTVPVRLASVGLTAQHFDPTAATMPDESKRLTTFSGGV CCEEEEECCCCCEEEEECCCCCCCEEEEEEECCEEECCCCCCCCCCCCCCEEEEECCCE VAADTIHITIRDATSDQYDVRGFGVYLDDGTLFATYSQQDIILSKSASAMLLLAIDVRFV EEEEEEEEEEEECCCCCEEEEEEEEEEECCEEEEEECCCEEEEECCCCEEEEEEEEEEEE DTDATQLTFGETSWNNPPATQTVAGVLTLSSNAQAIAGLEDRSAIPPTALKATLDHRLGE ECCCCEEEECCCCCCCCCCHHHEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHCC AAPSDYAKTLLASADAPTLRHLLGLGDAAVMDTGSGKNLDADLLDGYHGTYYLQWRNLQN CCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHCCCCCEEEEEECCCCC TPQTYPPSAHQHASSDIPELASQLDTLVKKTGSLMTGSLQSQGTLIGDALGNGRIPALKI CCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCCEEEE GNDCEFWDNNIPYAATFRSGTSPAIAQLFFGTSNHCYFGTSTKNTSTVIGAKTGLLWIET CCCCCCCCCCCCEEEEECCCCCHHHHHEEECCCCCEEEECCCCCCEEEEEECCCEEEEEE AGNYYYQQHDTTHVAFYKKNGGHAFFWRRSDSGGSGSTNEVQLMALEDNGNLSVKGTIVS CCCEEEEECCCEEEEEEEECCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEEEE AGGYAQGSSRKLKDIEGPLPYGLAEIEQLTPLIGRYKPSYTPDGRRRLFLEAEQLLDLMP CCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHCC ETVNPEGIPFQGAYVPSVNLDQLLPVLVNAIAQLSAKVNALTDAPRHAEK CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA