Click here to switch to the map view.

The map label for this gene is ompA [H]

Identifier: 28199574

GI number: 28199574

Start: 1977972

End: 1978700

Strand: Reverse

Name: ompA [H]

Synonym: PD1699

Alternate gene names: 28199574

Gene position: 1978700-1977972 (Counterclockwise)

Preceding gene: 28199576

Following gene: 28199572

Centisome position: 78.53

GC content: 52.13

Gene sequence:

>729_bases
ATGATGATGATGCGAGCGGCCCTTAAGCCTATGTGTACAGTTCTGGCGGTGGCGCTGGTGCTGTCCGGTTGTGCTACAGG
TGGATCTTATGTGCAGCGTGACCAGTCTGGTAATTCCACAGAGCAGCGAAACCGGACCGGGCGGGATGCGGCCATTGGTG
CGGCCATTGGCGCTGCTGCGGGTTTGTTGACTGGTAAAAATGCCACCAAGCGGAGACAGCGCGCGATGATTGCTGCTGGT
ATCGGTGCACTTGGCGGGGCAGCGATTGGTAATTACCAGGATCGTCAAGAACGCGCTTTGCGTGAGCGCACGGCCAATAC
TGGCATTGATGTCAAGCGTGACGGTGACAATATCACTCTCAATTTGCCGGACGGTATTACTTTCGATTTTGGTAAGTCGA
TGCTCAAGCCGCAATTTTATGGCGCACTTAAAAATGTCGCTTCGACGTTGCGCGAGTATAACCAGACGATGATTGAGGTG
GTTGGTTATACCGATAGTATTGGCAGTGATGTGGTGAATCAGCGCTTGTCTGAGGATCGTGCTGGTGCGGTTGCTAGTTA
TTTAGCGGCACAAGGTGTGCAGCGTGAACGTATGGAAATCTCGGGGATGGGAAAACGTTACCCGATTGCCGATAACAGTA
CAGAAGCTGGGCGTAGTAAGAACCGGCGTGTTGAAATACATTTGATTCCATTCAGTGCTGAAAATAGCGGTGCCACAGGC
ATGCATTGA

Upstream 100 bases:

>100_bases
TTGTTGTAGTCTGATTGTTGTCCAGGTTTCCATCACCCAGTTGATGTATCTCTGCGTTTATCTTAACTATTGGTGTGCCG
GATGTGCCGGCGAAGGAGTA

Downstream 100 bases:

>100_bases
GTCTGTATTAACTGCTTGTACGCTGTATGTTGCTTGTGAAGCGCGCTTTTTGAGTATTTATCTGCCGTAGTTTGGATTTC
CTCTGGATTTGTTTGTTGTT

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MMMMRAALKPMCTVLAVALVLSGCATGGSYVQRDQSGNSTEQRNRTGRDAAIGAAIGAAAGLLTGKNATKRRQRAMIAAG
IGALGGAAIGNYQDRQERALRERTANTGIDVKRDGDNITLNLPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEV
VGYTDSIGSDVVNQRLSEDRAGAVASYLAAQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIHLIPFSAENSGATG
MH

Sequences:

>Translated_242_residues
MMMMRAALKPMCTVLAVALVLSGCATGGSYVQRDQSGNSTEQRNRTGRDAAIGAAIGAAAGLLTGKNATKRRQRAMIAAG
IGALGGAAIGNYQDRQERALRERTANTGIDVKRDGDNITLNLPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEV
VGYTDSIGSDVVNQRLSEDRAGAVASYLAAQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIHLIPFSAENSGATG
MH
>Mature_242_residues
MMMMRAALKPMCTVLAVALVLSGCATGGSYVQRDQSGNSTEQRNRTGRDAAIGAAIGAAAGLLTGKNATKRRQRAMIAAG
IGALGGAAIGNYQDRQERALRERTANTGIDVKRDGDNITLNLPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEV
VGYTDSIGSDVVNQRLSEDRAGAVASYLAAQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIHLIPFSAENSGATG
MH

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=231, Percent_Identity=39.8268398268398, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=34.1666666666667, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1788957, Length=111, Percent_Identity=36.036036036036, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 25821; Mature: 25821

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMMRAALKPMCTVLAVALVLSGCATGGSYVQRDQSGNSTEQRNRTGRDAAIGAAIGAAA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHH
GLLTGKNATKRRQRAMIAAGIGALGGAAIGNYQDRQERALRERTANTGIDVKRDGDNITL
HHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCCEEEECCCEEEE
NLPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYTDSIGSDVVNQRLSEDR
ECCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AGAVASYLAAQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIHLIPFSAENSGATG
HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
MH
CC
>Mature Secondary Structure
MMMMRAALKPMCTVLAVALVLSGCATGGSYVQRDQSGNSTEQRNRTGRDAAIGAAIGAAA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHH
GLLTGKNATKRRQRAMIAAGIGALGGAAIGNYQDRQERALRERTANTGIDVKRDGDNITL
HHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCCEEEECCCEEEE
NLPDGITFDFGKSMLKPQFYGALKNVASTLREYNQTMIEVVGYTDSIGSDVVNQRLSEDR
ECCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AGAVASYLAAQGVQRERMEISGMGKRYPIADNSTEAGRSKNRRVEIHLIPFSAENSGATG
HHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
MH
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]