| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is bfr [H]
Identifier: 28199549
GI number: 28199549
Start: 1942897
End: 1943361
Strand: Reverse
Name: bfr [H]
Synonym: PD1672
Alternate gene names: 28199549
Gene position: 1943361-1942897 (Counterclockwise)
Preceding gene: 28199550
Following gene: 28199547
Centisome position: 77.12
GC content: 44.52
Gene sequence:
>465_bases ATGAAGGGAGACCCTAAGGTTATCGAATATCTTAATAAGGTGCTCTACAAAGAGCTTACTGCCATCAATCAATATTTCTT GCATGCGAAGATGTTGAAGAATTGGGGGCTGGCGGGGCTTGCTGAGCACGAGTACAAAGAATCGATTGATGAAATGAAAC ACGCTGATCGGCTATCTGACCGGATACTCTTTCTGGATGGTTTGCCTAATTTTCAGGCGTTGGGTAAGTTGCGTATCGGC GAAAGTCCAACCGAGATATTTAGTGGCGATTTGGCATTGGAGCAGGAGGCAGTTGCATTACTCCGTGAGGCGATTTCTTA CACTGAATCGGTACAGGATTATGTCAGCCGGGAGCTGTTGGTCGATATTCTCAACTCTGAAGAAGAGCATATTGATTGGC TTCAAATGCAATTAGATATTGTCAAGCGAATTGGGGAGCCCAATTACCTGCTTACAAAGTTGTAA
Upstream 100 bases:
>100_bases AACGATGTGCAACAGGTAATCGTAATGAGCACGATTTTCGTTCCTTCATCGGTAGATCAAGGCAGCTACAGTACCTAGAA TTTTCTACCGGAGATGTTGT
Downstream 100 bases:
>100_bases AACTTGATTATTCAGTGCTAGATCGGTGTGCAATCTTCAGGCCCCAAGCTGATTTCACGCGCTCATGCTCTGTGAATAAA AGTGCCGCCATCGTATCGGC
Product: bacterioferritin
Products: NA
Alternate protein names: BFR; Cytochrome b-557.5 [H]
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MKGDPKVIEYLNKVLYKELTAINQYFLHAKMLKNWGLAGLAEHEYKESIDEMKHADRLSDRILFLDGLPNFQALGKLRIG ESPTEIFSGDLALEQEAVALLREAISYTESVQDYVSRELLVDILNSEEEHIDWLQMQLDIVKRIGEPNYLLTKL
Sequences:
>Translated_154_residues MKGDPKVIEYLNKVLYKELTAINQYFLHAKMLKNWGLAGLAEHEYKESIDEMKHADRLSDRILFLDGLPNFQALGKLRIG ESPTEIFSGDLALEQEAVALLREAISYTESVQDYVSRELLVDILNSEEEHIDWLQMQLDIVKRIGEPNYLLTKL >Mature_154_residues MKGDPKVIEYLNKVLYKELTAINQYFLHAKMLKNWGLAGLAEHEYKESIDEMKHADRLSDRILFLDGLPNFQALGKLRIG ESPTEIFSGDLALEQEAVALLREAISYTESVQDYVSRELLVDILNSEEEHIDWLQMQLDIVKRIGEPNYLLTKL
Specific function: May perform analogous functions in iron detoxification and storage to that of animal ferritins [H]
COG id: COG2193
COG function: function code P; Bacterioferritin (cytochrome b1)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ferritin-like diiron domain [H]
Homologues:
Organism=Escherichia coli, GI1789733, Length=154, Percent_Identity=61.038961038961, Blast_Score=192, Evalue=6e-51,
Paralogues:
None
Copy number: 1639 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002024 - InterPro: IPR009040 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 17766; Mature: 17766
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS50905 FERRITIN_LIKE ; PS00549 BACTERIOFERRITIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGDPKVIEYLNKVLYKELTAINQYFLHAKMLKNWGLAGLAEHEYKESIDEMKHADRLSD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC RILFLDGLPNFQALGKLRIGESPTEIFSGDLALEQEAVALLREAISYTESVQDYVSRELL CEEEECCCCCHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDILNSEEEHIDWLQMQLDIVKRIGEPNYLLTKL HHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCC >Mature Secondary Structure MKGDPKVIEYLNKVLYKELTAINQYFLHAKMLKNWGLAGLAEHEYKESIDEMKHADRLSD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC RILFLDGLPNFQALGKLRIGESPTEIFSGDLALEQEAVALLREAISYTESVQDYVSRELL CEEEECCCCCHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDILNSEEEHIDWLQMQLDIVKRIGEPNYLLTKL HHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1549605; 1904771 [H]