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The map label for this gene is 28199500

Identifier: 28199500

GI number: 28199500

Start: 1879141

End: 1879881

Strand: Reverse

Name: 28199500

Synonym: PD1623

Alternate gene names: NA

Gene position: 1879881-1879141 (Counterclockwise)

Preceding gene: 28199501

Following gene: 28199499

Centisome position: 74.6

GC content: 52.23

Gene sequence:

>741_bases
ATGTCTGATAAGAGGGAGACACGTATTAAGTCAGTTCAGAATCTCGCTCCTGTTTACAACGTGCGTGATGATGCCAAAAC
ACGCCGTCGTGTTGCGTTGACTCAGAAGCTTGGGCGCGCCTATAACCAATTTAATGCCGGTGATGATGTGGCTGCCGAGA
AGTTGCTAGAAGAAGTATTGCGCCAGGATACATCTTCAATTGATGCCTGGACACTGCGGGGCACGATCTATAGTAAGCGT
GGCGATGTGGTGCATTCCGGTGAGTACTACCGTAAGGCTGCCCAGTTGGCGCCACAGCGTGGTGATGTACTTAATAATTA
CGGTGCTTGGTTGTGTGCAAATGGGTATCCAGCCGAGGCATTGGTTTGGTTCGAACGTGCGATGGCTGATCCGGCCTATG
GCGAGCAGCCGGGAACTTTAGCCAATTCCGGCGGTTGTGCCCTTCAAGCTGGACAGCGTGATCGTGCCGACCACGATTTG
CGTAGAGCGCTGGAGTTGGATCCAACCAATGCTTACGCATTGGAATCAATGGCGCGAAACGAATACGACAAACATCGCTA
TTTTGAAGCGCGTGCTTTCAGCGAGCGTCGTTTGGCAACAACTGTGCCTGCGACGGCTTCTGTATTAAAACTCGCGATTC
AAATCGAGCAAGAGCTAGGAGACAGGGCAGCTGCTAGCCGATATCAACAGCGGTTAGTCAAGGAGTTTCCCGAGACTGTA
GCCGTCGAACCCAGGGGCTAA

Upstream 100 bases:

>100_bases
CGCCGCACTATTGAAGATCGGGTTGGTCGAGATGTTGCAGCGTGATATATCCCTGGTTTTAGCGTTTTCTTCTTTACTGA
TTTTATCTGGCTGCTTAGTC

Downstream 100 bases:

>100_bases
TGTATTGTGATCAGTGATTTCGATCCTAACCCTTCCGAGCATGATTCGAATCCTGACCCTTTTGAACATGCGAAAGGATG
TGGACAACGTTTACGTGATG

Product: hypothetical protein

Products: NA

Alternate protein names: Fimbrial Biogenesis Protein; TPR Repeat-Containing Protein; Type IV Pilus Biogenesis Protein PilF; Tfp Pilus Assembly Protein PilF; PilF Type IV Pilus Assembly Protein; Type IV Pilus Assembly Protein PilF; TPR Repeat-Containing Pilus Assembly Protein PilF; Type Iv Pilus Biogenesis/Stability Protein Pilw; Tpr Repeat Protein; LysM Domain-Containing Protein; Fimbrial Biogenesis And Twitching Motility Protein; TPR Domain-Containing Protein; Lipoprotein

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MSDKRETRIKSVQNLAPVYNVRDDAKTRRRVALTQKLGRAYNQFNAGDDVAAEKLLEEVLRQDTSSIDAWTLRGTIYSKR
GDVVHSGEYYRKAAQLAPQRGDVLNNYGAWLCANGYPAEALVWFERAMADPAYGEQPGTLANSGGCALQAGQRDRADHDL
RRALELDPTNAYALESMARNEYDKHRYFEARAFSERRLATTVPATASVLKLAIQIEQELGDRAAASRYQQRLVKEFPETV
AVEPRG

Sequences:

>Translated_246_residues
MSDKRETRIKSVQNLAPVYNVRDDAKTRRRVALTQKLGRAYNQFNAGDDVAAEKLLEEVLRQDTSSIDAWTLRGTIYSKR
GDVVHSGEYYRKAAQLAPQRGDVLNNYGAWLCANGYPAEALVWFERAMADPAYGEQPGTLANSGGCALQAGQRDRADHDL
RRALELDPTNAYALESMARNEYDKHRYFEARAFSERRLATTVPATASVLKLAIQIEQELGDRAAASRYQQRLVKEFPETV
AVEPRG
>Mature_245_residues
SDKRETRIKSVQNLAPVYNVRDDAKTRRRVALTQKLGRAYNQFNAGDDVAAEKLLEEVLRQDTSSIDAWTLRGTIYSKRG
DVVHSGEYYRKAAQLAPQRGDVLNNYGAWLCANGYPAEALVWFERAMADPAYGEQPGTLANSGGCALQAGQRDRADHDLR
RALELDPTNAYALESMARNEYDKHRYFEARAFSERRLATTVPATASVLKLAIQIEQELGDRAAASRYQQRLVKEFPETVA
VEPRG

Specific function: Unknown

COG id: COG3063

COG function: function code NU; Tfp pilus assembly protein PilF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27599; Mature: 27468

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKRETRIKSVQNLAPVYNVRDDAKTRRRVALTQKLGRAYNQFNAGDDVAAEKLLEEVL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RQDTSSIDAWTLRGTIYSKRGDVVHSGEYYRKAAQLAPQRGDVLNNYGAWLCANGYPAEA
HHCCCCCCEEEEECEEECCCCCEEECCHHHHHHHHHCCCCCCHHHCCCCEEECCCCCHHH
LVWFERAMADPAYGEQPGTLANSGGCALQAGQRDRADHDLRRALELDPTNAYALESMARN
HHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
EYDKHRYFEARAFSERRLATTVPATASVLKLAIQIEQELGDRAAASRYQQRLVKEFPETV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE
AVEPRG
ECCCCC
>Mature Secondary Structure 
SDKRETRIKSVQNLAPVYNVRDDAKTRRRVALTQKLGRAYNQFNAGDDVAAEKLLEEVL
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RQDTSSIDAWTLRGTIYSKRGDVVHSGEYYRKAAQLAPQRGDVLNNYGAWLCANGYPAEA
HHCCCCCCEEEEECEEECCCCCEEECCHHHHHHHHHCCCCCCHHHCCCCEEECCCCCHHH
LVWFERAMADPAYGEQPGTLANSGGCALQAGQRDRADHDLRRALELDPTNAYALESMARN
HHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
EYDKHRYFEARAFSERRLATTVPATASVLKLAIQIEQELGDRAAASRYQQRLVKEFPETV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE
AVEPRG
ECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA